Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq20611 116 2e-21
seq46 113 3e-20
seq13143 104 2e-17
seq1581 98.7 7e-16
>seq20611
Length=922441
Score = 116 bits (128), Expect = 2e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||||||||| || || || ||||| || || ||||| | |
Sbjct 520771 ATGCAGATCTTTGTCAAAACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC 520712
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || || ||||||||||| | || || || ||
Sbjct 520711 GACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 520652
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || |||||||||||||| |||||||| | ||||| || || ||||||
Sbjct 520651 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 520592
Query 23791 ATACAAAAAGAGTCCACATTACAT 23814
|| || ||||||||||| || |||
Sbjct 520591 ATCCAGAAAGAGTCCACTTTGCAT 520568
Score = 113 bits (124), Expect = 3e-20
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || || || ||||| || || ||||| | |
Sbjct 520543 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT 520484
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || || || ||||||||| | || || || ||
Sbjct 520483 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAAGAAGGTATTCCCCCTGACCAG 520424
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || |||||||||||||| |||||||| | ||||| || || ||||||
Sbjct 520423 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGTCGCACATTGTCTGACTACAAC 520364
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
|| |||||||||||||| || ||| | || ||
Sbjct 520363 ATCCAAAAAGAGTCCACCTTGCATCTGGTGTT 520332
>seq46
Length=2207375
Score = 113 bits (124), Expect = 3e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || || || ||||| ||||| ||||| |||
Sbjct 2031010 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2031069
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || || || || ||||| | || || || ||
Sbjct 2031070 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 2031129
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || ||||||||||| ||||||| | ||||||| | ||| ||||||
Sbjct 2031130 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAAC 2031189
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || |||||||||||
Sbjct 2031190 ATCCAGAAAGAGTCCAC 2031206
>seq13143
Length=1991197
Score = 104 bits (114), Expect = 2e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| ||||| || || || || || || || ||||| ||||| ||||| ||
Sbjct 1624591 AAGATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 1624650
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| |||| | | ||| ||||| ||||| ||||| | || || ||
Sbjct 1624651 AGCGACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGAC 1624710
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| |||||| | || ||||| ||||| || ||||||| | |||||| | ||||||
Sbjct 1624711 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTAC 1624770
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || || |||||
Sbjct 1624771 AACATCCAGAAGGAATCCAC 1624790
Score = 84.2 bits (92), Expect = 1e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763
|| || ||||| | || || || || |||||||| || || ||||||||||| |||||
Sbjct 1626253 GATAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTGATCTTCGCCGGCAAACAGTTGGAA 1626312
Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807
|| | ||||||| | ||| |||||||| || |||||||||||
Sbjct 1626313 GATGGACGCACTCTGTCCGACTACAACATCCAGAAAGAGTCCAC 1626356
>seq1581
Length=2594311
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||||||||| || || || ||||| || || || || | |
Sbjct 1373397 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGC 1373338
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || ||| || ||||||||||| | || || || ||
Sbjct 1373337 GACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 1373278
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | | || || || |||||||| |||||||| | ||||| | || ||||||
Sbjct 1373277 CAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAAC 1373218
Query 23791 ATACAAAAAGAGTCCACATTACAT 23814
|| || ||||||||||| || |||
Sbjct 1373217 ATCCAGAAAGAGTCCACCTTGCAT 1373194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337656633686456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |