Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq20611 116 2e-21 seq46 113 3e-20 seq13143 104 2e-17 seq1581 98.7 7e-16 >seq20611 Length=922441 Score = 116 bits (128), Expect = 2e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| || || ||||| | | Sbjct 520771 ATGCAGATCTTTGTCAAAACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC 520712 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||||||||| | || || || || Sbjct 520711 GACACAATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 520652 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||||||||| |||||||| | ||||| || || |||||| Sbjct 520651 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 520592 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || ||||||||||| || ||| Sbjct 520591 ATCCAGAAAGAGTCCACTTTGCAT 520568 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| || || ||||| | | Sbjct 520543 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT 520484 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || ||||||||| | || || || || Sbjct 520483 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGATAAAGAAGGTATTCCCCCTGACCAG 520424 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || |||||||||||||| |||||||| | ||||| || || |||||| Sbjct 520423 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGTCGCACATTGTCTGACTACAAC 520364 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || |||||||||||||| || ||| | || || Sbjct 520363 ATCCAAAAAGAGTCCACCTTGCATCTGGTGTT 520332 >seq46 Length=2207375 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || || || ||||| ||||| ||||| ||| Sbjct 2031010 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 2031069 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || || ||||| | || || || || Sbjct 2031070 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 2031129 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || ||||||||||| ||||||| | ||||||| | ||| |||||| Sbjct 2031130 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGCACTCTGTCCGACTACAAC 2031189 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 2031190 ATCCAGAAAGAGTCCAC 2031206 >seq13143 Length=1991197 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || || || || || || || ||||| ||||| ||||| || Sbjct 1624591 AAGATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCC 1624650 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| |||| | | ||| ||||| ||||| ||||| | || || || Sbjct 1624651 AGCGACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATCCCTCCTGAC 1624710 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || ||||| ||||| || ||||||| | |||||| | |||||| Sbjct 1624711 CAGCAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAAGATGGACGCACGCTGTCTGATTAC 1624770 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || || ||||| Sbjct 1624771 AACATCCAGAAGGAATCCAC 1624790 Score = 84.2 bits (92), Expect = 1e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 || || ||||| | || || || || |||||||| || || ||||||||||| ||||| Sbjct 1626253 GATAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTGATCTTCGCCGGCAAACAGTTGGAA 1626312 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || | ||||||| | ||| |||||||| || ||||||||||| Sbjct 1626313 GATGGACGCACTCTGTCCGACTACAACATCCAGAAAGAGTCCAC 1626356 >seq1581 Length=2594311 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||||||||| || || || ||||| || || || || | | Sbjct 1373397 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGC 1373338 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| || ||||||||||| | || || || || Sbjct 1373337 GACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 1373278 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || |||||||| |||||||| | ||||| | || |||||| Sbjct 1373277 CAGAGGCTGATCTTCGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAAC 1373218 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || ||||||||||| || ||| Sbjct 1373217 ATCCAGAAAGAGTCCACCTTGCAT 1373194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337656633686456