Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq46 156 1e-32
seq13143 149 1e-30
seq1581 109 1e-18
seq20611 107 5e-18
>seq46
Length=2207375
Score = 156 bits (172), Expect = 1e-32
Identities = 170/223 (76%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | |||||| || ||||| ||||| || || |||| ||||| |||| || ||
Sbjct 2031892 ACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 2031833
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||| ||||||||||| || || || ||||| || ||||| ||
Sbjct 2031832 GCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 2031773
Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
||||||||||||||| ||| || || ||| || |||||||| || || || || |
Sbjct 2031772 TTCCTTGTCTTGGAT-TTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGA 2031714
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||||||| ||||| || || | ||| | |||||
Sbjct 2031713 GGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031671
Score = 149 bits (164), Expect = 1e-30
Identities = 149/191 (78%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||||||||| || || |||| ||||| |||| || || | ||||||
Sbjct 2030765 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 2030706
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || ||||| || ||||| ||||||||||||
Sbjct 2030705 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 2030646
Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||| ||| || |||||| || |||||||| || || || || | ||||| ||
Sbjct 2030645 TGGAT-TTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 2030587
Query 225681 CTTGCCCGTCA 225691
|||||| ||||
Sbjct 2030586 CTTGCCAGTCA 2030576
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||||||||| || || |||| ||||| |||| || || | ||||||
Sbjct 2030993 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 2030934
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || ||||| || ||||| |||||||| ||
Sbjct 2030933 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 2030874
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || || |||||||| || || || || | ||||| |||
Sbjct 2030873 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTC 2030814
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| || || | ||| | |||||
Sbjct 2030813 TTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2030782
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||||||||| || || |||| ||||| || | || || | |||||
Sbjct 2031654 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCC 2031595
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || || || || ||||| |||||||||||
Sbjct 2031594 TCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 2031535
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || || |||||||| || || || || || ||||| |||
Sbjct 2031534 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTC 2031475
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| || || | ||| | |||||
Sbjct 2031474 TTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2031443
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || |||||||||||||| || || |||| ||||| |||| || || | ||||||
Sbjct 2031426 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 2031367
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||| || || || ||||| || ||||| |||||||||||
Sbjct 2031366 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 2031307
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || || |||||||| || || || || | ||||| ||
Sbjct 2031306 TGGATCTTGGCCTTGACGTTCTCTATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTT 2031247
Query 225682 TTGCCCGTCAAAGTTTT 225698
|| || ||||| || ||
Sbjct 2031246 TTACCAGTCAAGGTCTT 2031230
>seq13143
Length=1991197
Score = 149 bits (164), Expect = 1e-30
Identities = 157/207 (76%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | |||||| || || || ||||| || || |||| ||||| |||| || ||
Sbjct 1626609 ACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGT 1626550
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| |||||||| ||||||||||| || || || ||||| || ||||| ||
Sbjct 1626549 GCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 1626490
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||||||| |||||||| |||||| || |||||||| || || || || |
Sbjct 1626489 TTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAG 1626430
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| |||||||| |||| |||||
Sbjct 1626429 GGTGATGGTCTTGCCAGTCAGGGTTTT 1626403
Score = 136 bits (150), Expect = 9e-27
Identities = 162/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| |||||||| || |||| |||||||| | || || | |||||
Sbjct 1624806 CAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATC 1624747
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| | |||||| ||||| ||||| || || || ||||| || || || |||||||||||
Sbjct 1624746 TTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 1624687
Query 225621 TTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679
|||||| ||| || || || || |||||||| || || || || | ||||| |
Sbjct 1624686 TTGGAT-TTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGG 1624628
Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||||| |||| || || | ||| | ||||| ||
Sbjct 1624627 TCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATCTT 1624591
Score = 118 bits (130), Expect = 3e-21
Identities = 108/135 (80%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| |||||||| || |||| |||||||| | || || | |||||
Sbjct 1625597 CAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATC 1625538
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| | |||||| ||||| ||||| || || || ||||| || || || |||||||||||
Sbjct 1625537 TTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 1625478
Query 225621 TTGGATCTTTTGCTT 225635
|||||| ||| ||||
Sbjct 1625477 TTGGAT-TTTAGCTT 1625464
Score = 116 bits (128), Expect = 9e-21
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||||||||| ||||| ||||| ||||| |||| ||||| |||| || ||| | |||||
Sbjct 1626372 CAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATC 1626313
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| | ||| || || |||||||| | || || ||||| || ||||| |||||||| ||
Sbjct 1626312 TTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATC 1626253
Query 225621 TTGGATCTT 225629
|||||||||
Sbjct 1626252 TTGGATCTT 1626244
>seq1581
Length=2594311
Score = 109 bits (120), Expect = 1e-18
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| || || || | ||||| ||||| |||| ||||| || | || || | |||||
Sbjct 1373185 CAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATC 1373244
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| ||||| || ||||||||||| || | || ||||| || ||||| ||||| |||||
Sbjct 1373245 TTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 1373304
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
||||||||| ||| || || |||||||| | || || || | ||||| ||
Sbjct 1373305 CTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATGGT 1373364
Query 225681 CTTGCCCGTCAAAGTTTT 225698
|||||| || | |||||
Sbjct 1373365 CTTGCCAGTGAGGGTTTT 1373382
>seq20611
Length=922441
Score = 107 bits (118), Expect = 5e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
||||| |||||||||| ||||| || | ||| || | |||||||| ||||| || ||
Sbjct 520347 GTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGACCATCTTCCAGCTGTTTGCCG 520406
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636
|| ||||| | | || ||||| || ||||||||||| || || |||||||| |||
Sbjct 520407 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATACCTTCTTTATCCTGGATCTTAGCCTTG 520466
Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696
|| || |||||||| | || || || | ||||| |||||||| ||||| ||
Sbjct 520467 ACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTC 520526
Query 225697 TTTATGAACACTTGCAT 225713
|| | ||| | |||||
Sbjct 520527 TTGACGAAGATCTGCAT 520543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1191222038503308
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |