Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq11759 102 7e-17 seq11199 100 2e-16 seq16819 98.7 8e-16 seq6006 82.4 7e-11 >seq11759 Length=1730004 Score = 102 bits (112), Expect = 7e-17 Identities = 103/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 ||||| | |||||||| || ||||| || || | || | ||||||||| | || || | Sbjct 147485 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTT 147543 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || | ||| | || || |||||||| ||||| ||||| ||||||||||| || |||| Sbjct 147544 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAA 147603 Query 4687 ACGCTACTAATCG 4699 | ||||||||||| Sbjct 147604 ATGCTACTAATCG 147616 >seq11199 Length=1679328 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| || || | || | ||||||||| | ||||| || || Sbjct 643752 TCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCTTC 643693 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 | ||| | || || |||||||| ||||| ||||| |||||||| || || ||||| ||| Sbjct 643692 AACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATGCT 643633 Query 4692 ACTAATCG 4699 |||||||| Sbjct 643632 ACTAATCG 643625 >seq16819 Length=1945512 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||||||| || ||||| || || || || | ||| ||||| | |||||||| || Sbjct 739162 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 739103 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || |||| ||||| |||||||||||||| || ||||| || || ||||| || Sbjct 739102 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 739043 Query 4692 AC 4693 || Sbjct 739042 AC 739041 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| ||||| ||||| || | || || ||||||||||| || || ||||| || Sbjct 738603 GGATCTTTGATATAGGTGTCAATCAACAGACTGTACATTTCAGAGTGAATGTTTTCCATT 738544 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 |||||||| || ||||| ||||| | ||||| || ||||| || || | | ||||| Sbjct 738543 GCAATCTGGAAACCGTAGAAGCAACGGGCTTCGGTCACTTGGACCTCCTGAGTAAATC 738486 >seq6006 Length=139621 Score = 82.4 bits (90), Expect = 7e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || || ||||| || | || || ||||||||||| || || ||||| || Sbjct 86765 GGATCTTTGATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATG 86824 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 |||||||| || ||||| ||||| | ||||| || ||||| ||||| | | ||||| Sbjct 86825 GCAATCTGGAAACCGTAGAAGCAACGGGCTTCAGTCACTTGGACTTCCTGAGTAAATC 86882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426603653722106