Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq19301 114 2e-20 seq85036 105 9e-18 seq3398 105 9e-18 seq11759 89.7 7e-13 seq16819 84.2 3e-11 >seq19301 Length=1192634 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| ||||| ||||||||||| ||||| || ||| ||| ||||||| | ||| ||| Sbjct 386054 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCTCTGT 386113 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || |||||||||||||| || || || || | ||| ||| ||||||| || Sbjct 386114 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 386173 Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | |||| |||| Sbjct 386174 TCCAGGTACATAGCAAAAGCTCCTGGTC 386201 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 76843 CCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902 |||| |||| || ||||| |||||||| ||||||||| ||| | || || || || | Sbjct 380610 CCAGCTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGT 380669 Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962 | || || | ||||| || || || ||||| |||||||| || || ||||| |||| | Sbjct 380670 GGATGTTGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGA 380729 Query 76963 TGGTCTTTTGAGGAATTTCCCA 76984 |||||||||||| || ||||| Sbjct 380730 TGGTCTTTTGAGAGATCTCCCA 380751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| |||||||||| ||||| || ||||| || || || || ||||| || | || Sbjct 381053 TGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCAATTGAC 381112 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 ||||||||||||| || |||||||| || ||||| |||||||| |||| || Sbjct 381113 TCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCA 381164 >seq85036 Length=2202 Score = 105 bits (116), Expect = 9e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| ||||| ||||||||||| ||||| || || ||| ||||||| | ||| ||| Sbjct 1119 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 1060 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || || ||||||||||| || || || || | ||| ||| ||||||| || Sbjct 1059 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGC 1000 Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | |||| |||| Sbjct 999 TCCAGGTACATGGCAAAAGCTCCTGGTC 972 >seq3398 Length=854497 Score = 105 bits (116), Expect = 9e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| ||||| ||||||||||| ||||| || || ||| ||||||| | ||| ||| Sbjct 22325 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 22266 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 || || || || || ||||||||||| || || || || | ||| ||| ||||||| || Sbjct 22265 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGC 22206 Query 78123 TCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | |||| |||| Sbjct 22205 TCCAGGTACATGGCAAAAGCTCCTGGTC 22178 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| |||||||| ||||||||| ||| | || || || || || || | Sbjct 30534 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 30475 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || || || ||||| |||||||| || || ||||| |||| ||||||| Sbjct 30474 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 30415 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 |||| | || ||||| | ||| || | | || || | |||||||| Sbjct 30414 TTTGCGAGATCTCCCACACAGTCTTATACAGTTCCTTCAGGTCATCTGG 30366 >seq11759 Length=1730004 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || || | ||||| |||||||| || || | ||| || Sbjct 147489 TCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCTTC 147548 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 | ||| | || || || || |||||||| ||||| ||||||||||| || |||||||| Sbjct 147549 AACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATGC 147607 >seq16819 Length=1945512 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || || || ||||| || ||||| ||||| | || || Sbjct 739162 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 739103 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| || || | || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 739102 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGC 739044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693924792348480