Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq19301 109 8e-19 seq16819 107 3e-18 seq85036 100 4e-16 seq3398 100 4e-16 seq11759 91.5 2e-13 seq11199 87.8 3e-12 >seq19301 Length=1192634 Score = 109 bits (120), Expect = 8e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || || ||||| ||||||||||| ||||| || ||| ||| ||||||| | ||| || Sbjct 386054 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCTCTGT 386113 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || |||||||||||||| |||||||| || | ||| ||| ||||||| || Sbjct 386114 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 386173 Query 76718 TCTAGATATATCGCCATAACACCCGGTC 76745 || || || || || | | | || |||| Sbjct 386174 TCCAGGTACATAGCAAAAGCTCCTGGTC 386201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497 |||| |||| || ||||| |||||||| || |||||| ||| | || || || || | Sbjct 380610 CCAGCTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGT 380669 Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557 | || || | ||||| || || || ||||| |||||||| || || ||||| |||| | Sbjct 380670 GGATGTTGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGA 380729 Query 75558 TGGTCTTTTGAGGAATTTCCCA 75579 |||||||||||| || ||||| Sbjct 380730 TGGTCTTTTGAGAGATCTCCCA 380751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||| |||||||||| ||||| || ||||| || || || || ||||| || | || Sbjct 381053 TGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCAATTGAC 381112 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCA 75833 ||||||||||||| || |||||||| || ||||| |||||||| |||| || Sbjct 381113 TCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCA 381164 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | ||||||||| || ||||||||||| || ||||| || |||||| Sbjct 386754 GTGCCGGCATTGAAGAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCAGAGAGCAGATTG 386813 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| ||| |||| | || ||| | ||| ||||| || | || | ||||| | Sbjct 386814 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACGGACACTCTCATCAGC 386873 Query 77114 ATATGCTGAGGTCGTTC 77130 || || || || || || Sbjct 386874 ATGTGTTGTGGCCGCTC 386890 >seq16819 Length=1945512 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || || || ||||| |||||||| ||||| | ||| || Sbjct 739162 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 739103 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || |||| || ||||| ||||||||||| || ||||| ||||| || || || Sbjct 739102 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 739043 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 739042 ACCACTCTCTCCCC 739029 >seq85036 Length=2202 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || || ||||| ||||||||||| ||||| || || ||| ||||||| | ||| || Sbjct 1119 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 1060 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || || ||||||||||| |||||||| || | ||| ||| ||||||| || Sbjct 1059 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGC 1000 Query 76718 TCTAGATATATCGCCATAACACCCGGTC 76745 || || || || || | | | || |||| Sbjct 999 TCCAGGTACATGGCAAAAGCTCCTGGTC 972 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || || || | ||||||||| |||||||||||||| || ||||| || || ||| Sbjct 398 GTGCCAGCGTTGAAGAGTGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 339 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| ||| |||| | || ||| | ||| ||||| |||| || | ||||| | Sbjct 338 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACAGACACTCTCATCAGC 279 Query 77114 ATATGCTGAGGTCGTTC 77130 || || || || || || Sbjct 278 ATGTGTTGTGGCCGCTC 262 >seq3398 Length=854497 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || || ||||| ||||||||||| ||||| || || ||| ||||||| | ||| || Sbjct 22325 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 22266 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || || ||||||||||| |||||||| || | ||| ||| ||||||| || Sbjct 22265 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGC 22206 Query 76718 TCTAGATATATCGCCATAACACCCGGTC 76745 || || || || || | | | || |||| Sbjct 22205 TCCAGGTACATGGCAAAAGCTCCTGGTC 22178 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || ||||| |||||||| || |||||| ||| | || || || || || || | Sbjct 30534 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 30475 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || || || ||||| |||||||| || || ||||| |||| ||||||| Sbjct 30474 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 30415 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612 |||| | || ||||| | ||| || | | || || | |||||||| Sbjct 30414 TTTGCGAGATCTCCCACACAGTCTTATACAGTTCCTTCAGGTCATCTGG 30366 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || || || | ||||||||| |||||||||||||| || ||||| || || ||| Sbjct 21604 GTGCCAGCGTTGAAGAGTGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 21545 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| ||| |||| | || ||| | ||| ||||| |||| || | ||||| | Sbjct 21544 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACAGACACTCTCATCAGC 21485 Query 77114 ATATGCTGAGGTCGTTC 77130 || || || || || || Sbjct 21484 ATGTGTTGTGGCCGCTC 21468 >seq11759 Length=1730004 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 47122 ATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATA 47181 |||| || || ||| ||||||||||||| |||| |||| ||| ||||| ||||| || Sbjct 149176 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 149235 Query 47182 TCACGATATTGGATCGGAAAAATAACAAATCTATTTGGAtttt 47224 ||| |||| || || |||||||| ||||||| ||||| |||| Sbjct 149236 TCAGGATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTT 149278 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || || | ||||| || ||||| || || | || || Sbjct 147489 TCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCTTC 147548 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| | || || || || |||||||| ||||| ||||||||||| || || ||||| Sbjct 147549 AACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATGCT 147608 Query 46774 ACAAGTCTCTCTCC 46787 || | || |||||| Sbjct 147609 ACTAATCGCTCTCC 147622 >seq11199 Length=1679328 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 47122 ATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATA 47181 |||| || || ||| ||||||||||||| |||| |||| ||| ||||| ||||| || Sbjct 641027 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 640968 Query 47182 TCACGATATTGGATCGGAAAAATAACAAATCTATTTGGAtttt 47224 ||| |||| || || || ||||| ||||||| ||||| |||| Sbjct 640967 TCAGGATACTGAATAGGGAAAATGACAAATCGTTTTGGGTTTT 640925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712170829434240