Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq19301 109 8e-19
seq16819 107 3e-18
seq85036 100 4e-16
seq3398 100 4e-16
seq11759 91.5 2e-13
seq11199 87.8 3e-12
>seq19301
Length=1192634
Score = 109 bits (120), Expect = 8e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657
|| || ||||| ||||||||||| ||||| || ||| ||| ||||||| | ||| ||
Sbjct 386054 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCTCTGT 386113
Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717
|| || || || |||||||||||||| |||||||| || | ||| ||| ||||||| ||
Sbjct 386114 TCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAGGGC 386173
Query 76718 TCTAGATATATCGCCATAACACCCGGTC 76745
|| || || || || | | | || ||||
Sbjct 386174 TCCAGGTACATAGCAAAAGCTCCTGGTC 386201
Score = 98.7 bits (108), Expect = 1e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497
|||| |||| || ||||| |||||||| || |||||| ||| | || || || || |
Sbjct 380610 CCAGCTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGT 380669
Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557
| || || | ||||| || || || ||||| |||||||| || || ||||| |||| |
Sbjct 380670 GGATGTTGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGA 380729
Query 75558 TGGTCTTTTGAGGAATTTCCCA 75579
|||||||||||| || |||||
Sbjct 380730 TGGTCTTTTGAGAGATCTCCCA 380751
Score = 98.7 bits (108), Expect = 1e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||| |||||||||| ||||| || ||||| || || || || ||||| || | ||
Sbjct 381053 TGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCAATTGAC 381112
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCA 75833
||||||||||||| || |||||||| || ||||| |||||||| |||| ||
Sbjct 381113 TCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCA 381164
Score = 89.7 bits (98), Expect = 7e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | ||||||||| || ||||||||||| || ||||| || ||||||
Sbjct 386754 GTGCCGGCATTGAAGAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCAGAGAGCAGATTG 386813
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|| ||||| ||| |||| | || ||| | ||| ||||| || | || | ||||| |
Sbjct 386814 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACGGACACTCTCATCAGC 386873
Query 77114 ATATGCTGAGGTCGTTC 77130
|| || || || || ||
Sbjct 386874 ATGTGTTGTGGCCGCTC 386890
>seq16819
Length=1945512
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| || || | ||| || || || ||||| |||||||| ||||| | ||| ||
Sbjct 739162 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 739103
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| || |||| || ||||| ||||||||||| || ||||| ||||| || || ||
Sbjct 739102 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 739043
Query 46774 ACAAGTCTCTCTCC 46787
|| | |||||| ||
Sbjct 739042 ACCACTCTCTCCCC 739029
>seq85036
Length=2202
Score = 100 bits (110), Expect = 4e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657
|| || ||||| ||||||||||| ||||| || || ||| ||||||| | ||| ||
Sbjct 1119 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 1060
Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717
|| || || || || ||||||||||| |||||||| || | ||| ||| ||||||| ||
Sbjct 1059 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGC 1000
Query 76718 TCTAGATATATCGCCATAACACCCGGTC 76745
|| || || || || | | | || ||||
Sbjct 999 TCCAGGTACATGGCAAAAGCTCCTGGTC 972
Score = 89.7 bits (98), Expect = 7e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || || || || | ||||||||| |||||||||||||| || ||||| || || |||
Sbjct 398 GTGCCAGCGTTGAAGAGTGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 339
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|| ||||| ||| |||| | || ||| | ||| ||||| |||| || | ||||| |
Sbjct 338 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACAGACACTCTCATCAGC 279
Query 77114 ATATGCTGAGGTCGTTC 77130
|| || || || || ||
Sbjct 278 ATGTGTTGTGGCCGCTC 262
>seq3398
Length=854497
Score = 100 bits (110), Expect = 4e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657
|| || ||||| ||||||||||| ||||| || || ||| ||||||| | ||| ||
Sbjct 22325 ACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTCTGT 22266
Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717
|| || || || || ||||||||||| |||||||| || | ||| ||| ||||||| ||
Sbjct 22265 TCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAGGGC 22206
Query 76718 TCTAGATATATCGCCATAACACCCGGTC 76745
|| || || || || | | | || ||||
Sbjct 22205 TCCAGGTACATGGCAAAAGCTCCTGGTC 22178
Score = 98.7 bits (108), Expect = 1e-15
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
|||| || ||||| |||||||| || |||||| ||| | || || || || || || |
Sbjct 30534 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 30475
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
| | ||||| || || || ||||| |||||||| || || ||||| |||| |||||||
Sbjct 30474 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 30415
Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612
|||| | || ||||| | ||| || | | || || | ||||||||
Sbjct 30414 TTTGCGAGATCTCCCACACAGTCTTATACAGTTCCTTCAGGTCATCTGG 30366
Score = 89.7 bits (98), Expect = 7e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || || || || | ||||||||| |||||||||||||| || ||||| || || |||
Sbjct 21604 GTGCCAGCGTTGAAGAGTGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 21545
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
|| ||||| ||| |||| | || ||| | ||| ||||| |||| || | ||||| |
Sbjct 21544 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACAGACACTCTCATCAGC 21485
Query 77114 ATATGCTGAGGTCGTTC 77130
|| || || || || ||
Sbjct 21484 ATGTGTTGTGGCCGCTC 21468
>seq11759
Length=1730004
Score = 91.5 bits (100), Expect = 2e-13
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 47122 ATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATA 47181
|||| || || ||| ||||||||||||| |||| |||| ||| ||||| ||||| ||
Sbjct 149176 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 149235
Query 47182 TCACGATATTGGATCGGAAAAATAACAAATCTATTTGGAtttt 47224
||| |||| || || |||||||| ||||||| ||||| ||||
Sbjct 149236 TCAGGATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTT 149278
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| || || | ||| || || | ||||| || ||||| || || | || ||
Sbjct 147489 TCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCGCTTTTCTTC 147548
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
| ||| | || || || || |||||||| ||||| ||||||||||| || || |||||
Sbjct 147549 AACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCTACTGCTGCAAATGCT 147608
Query 46774 ACAAGTCTCTCTCC 46787
|| | || ||||||
Sbjct 147609 ACTAATCGCTCTCC 147622
>seq11199
Length=1679328
Score = 87.8 bits (96), Expect = 3e-12
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 47122 ATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATA 47181
|||| || || ||| ||||||||||||| |||| |||| ||| ||||| ||||| ||
Sbjct 641027 ATATTCACCTCCTCAACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 640968
Query 47182 TCACGATATTGGATCGGAAAAATAACAAATCTATTTGGAtttt 47224
||| |||| || || || ||||| ||||||| ||||| ||||
Sbjct 640967 TCAGGATACTGAATAGGGAAAATGACAAATCGTTTTGGGTTTT 640925
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712170829434240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |