Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015-
12-14] 85,682 sequences; 1,632,718,266 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq46 129 1e-24
seq13143 120 7e-22
seq1581 116 9e-21
seq20611 114 3e-20
>seq46
Length=2207375
Score = 129 bits (142), Expect = 1e-24
Identities = 168/231 (73%), Gaps = 1/231 (0%)
Strand=Plus/Minus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | ||| || || || ||||| ||||| || ||||||||||| |||| | ||
Sbjct 2030775 CCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 2030716
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || || || |||||||| || | ||||||||| | | || ||
Sbjct 2030715 GCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCC 2030656
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
|||||| ||||| ||||| ||| ||| |||| | | |||| ||| || || ||
Sbjct 2030655 TTCCTTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAG 2030596
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACCCT 152112
|| || || ||||| || || |||||||| |||| |||||| ||||| ||
Sbjct 2030595 GGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCT 2030545
Score = 125 bits (138), Expect = 2e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| ||||| || || ||||| || ||||||||||| |||| | || | ||||||
Sbjct 2031882 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 2031823
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| || | ||||||||| | | || |||||||| |||
Sbjct 2031822 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 2031763
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| ||||| ||||||| |||| | | |||| ||| || || || || || ||
Sbjct 2031762 TGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTC 2031703
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || | ||||||||||||| ||||||
Sbjct 2031702 TTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031671
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || |||||||| ||||||||||| |||| | ||| | ||||||
Sbjct 2031221 AGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 2031162
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | ||| ||||||||||| | | ||||||||| | | || |||||||| ||
Sbjct 2031161 TCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 2031102
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || ||||| |||| | | |||| ||| || || || || || ||
Sbjct 2031101 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTC 2031042
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || | ||||||||||||| ||||||
Sbjct 2031041 TTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031010
Score = 105 bits (116), Expect = 2e-17
Identities = 156/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
|| || | ||| || || || ||||| ||||| || ||||||||||| |||| | ||
Sbjct 2031002 CTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 2030943
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| |||||||| || || || |||||||| || | ||||||||| | | || |||
Sbjct 2030942 CGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCT 2030883
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || || || || ||||| |||| | | |||| ||| || || ||
Sbjct 2030882 TCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGG 2030823
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| || || ||||| ||||||| ||||||
Sbjct 2030822 GTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2030782
Score = 98.7 bits (108), Expect = 2e-15
Identities = 157/224 (70%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
|| || | ||| || || || ||||| ||||| || ||||||||||| || | | ||
Sbjct 2031663 CTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 2031604
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||| || || || || |||||||| || | |||||| || | | || |||
Sbjct 2031603 CGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCT 2031544
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
||||| || || || || ||||| |||| | | |||| ||| ||| |||||
Sbjct 2031543 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCAACTTCC 2031487
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| ||| || || ||||| || || ||||| ||||||| ||||||
Sbjct 2031486 AAAGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2031443
Score = 89.7 bits (98), Expect = 1e-12
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
|| || | ||| || || || ||||| ||||| || ||||||||||| |||| | ||
Sbjct 2031435 CTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTG 2031376
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| |||||||| || || || || ||||| || | ||||||||| | | || |||
Sbjct 2031375 CGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCT 2031316
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || || || || ||||| |||||| | |||| ||| || || ||
Sbjct 2031315 TCCTTGTCCTGGATCTTGGCCTTGACGTTCTCTATGGTGTCGCTGGGCTCAACCTCGAGG 2031256
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092
|| || ||||| || || | ||||||||
Sbjct 2031255 GTGATGGTTTTACCAGTCAAGGTCTTCAC 2031227
>seq13143
Length=1991197
Score = 120 bits (132), Expect = 7e-22
Identities = 160/221 (72%), Gaps = 1/221 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || || || || |||||||||||||| | | || | ||||||
Sbjct 1624805 AGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCT 1624746
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | || || || ||||| || | ||||||||| | | ||| |||||||| |||
Sbjct 1624745 TCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1624686
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| ||||| |||||| |||| | | |||| ||| || || || || || ||
Sbjct 1624685 TGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTC 1624626
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACCCT 152112
||||| || || ||||| ||||||| |||||| ||||| ||
Sbjct 1624625 TTGCCAGTCAGCGTCTTGACGAAGATCTGCATCTTTACGCT 1624585
Score = 98.7 bits (108), Expect = 2e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| ||||| || || ||||| || ||||||||||| |||| | || | ||||||
Sbjct 1626599 AGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCT 1626540
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| || | ||||||||| | | || |||||||| ||
Sbjct 1626539 TCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCC 1626480
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || || || |||| | | |||| ||| || || || || || ||
Sbjct 1626479 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTC 1626420
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || || ||||| |||| ||||||
Sbjct 1626419 TTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1626388
Score = 96.9 bits (106), Expect = 8e-15
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || |||||||| ||||||||||| |||| | ||| | ||||||
Sbjct 1626371 AGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCT 1626312
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | ||| ||||||||||| | | ||||||||| | | || |||||||| |||
Sbjct 1626311 TCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCT 1626252
Query 152013 TGAATTTT 152020
|| || ||
Sbjct 1626251 TGGATCTT 1626244
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||||||||| || || || || || |||||||||||||| | | || | ||||||
Sbjct 1625596 AGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCT 1625537
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| | || || || ||||| || | ||||||||| | | ||| |||||||| |||
Sbjct 1625536 TCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1625477
Query 152013 TGAATTTTTTGTTTGACAGTCTC 152035
|| ||||| |||||| ||||
Sbjct 1625476 TGGATTTTAGCTTTGACGTTCTC 1625454
>seq1581
Length=2594311
Score = 116 bits (128), Expect = 9e-21
Identities = 159/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | || || ||||| | || |||||||| ||||||||||| || | | ||
Sbjct 1373176 CCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGT 1373235
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || ||| || |||||||| |||||||||||||| | | || ||
Sbjct 1373236 GCGACCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCC 1373295
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
||| || || || || ||| ||||| |||| | | |||| ||| || |||||
Sbjct 1373296 TTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAG 1373355
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| ||||| || || || |||| ||||||
Sbjct 1373356 GGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1373397
>seq20611
Length=922441
Score = 114 bits (126), Expect = 3e-20
Identities = 161/225 (72%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | | || ||||| | || |||||||||||||||||||| || | || ||
Sbjct 520322 CCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGACAATGT 520381
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || ||| ||||| ||||| | |||||||||||| | | || ||
Sbjct 520382 GCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATACC 520441
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
||| || || || || || ||||| |||| | | |||| ||| ||| || ||
Sbjct 520442 TTCTTTATCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTC---ACTTGGCTCAACCTC 520498
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || || || ||||| || | ||||| ||||||| ||||||
Sbjct 520499 AAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 520543
Score = 113 bits (124), Expect = 1e-19
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | || |||||||| | ||| |||||||| ||||||||||| || | || ||
Sbjct 520550 CCTGAGACGCAGCACAAGATGCAAAGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGT 520609
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || ||| ||||| ||||| | |||||||||||| | | || ||
Sbjct 520610 GCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCC 520669
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
||| || || || || || ||||| |||| | |||| ||| || |||||
Sbjct 520670 TTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCGCTTGGCTCAACCTCAAG 520729
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || ||||| || || || |||| ||||||
Sbjct 520730 GGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 520771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1152554134804622
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