Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20anshuiensis_20[refseq_20GCF_5F001515605.1_202015- 12-14] 85,682 sequences; 1,632,718,266 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq46 149 6e-31 seq13143 141 9e-29 seq1581 120 3e-22 seq20611 104 2e-17 >seq46 Length=2207375 Score = 149 bits (164), Expect = 6e-31 Identities = 168/223 (75%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| || || ||| ||||||||| ||||| |||||||| |||||||| Sbjct 2030999 AGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 2030940 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| ||||| ||||| ||||| | |||| || ||| Sbjct 2030939 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCC 2030880 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| ||| || ||| |||| | || |||||||| | ||| ||||| | Sbjct 2030879 TTATCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAG 2030824 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || ||||||||||| ||||| ||||||||| Sbjct 2030823 GGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATG 2030781 Score = 141 bits (156), Expect = 9e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| || || ||| ||||||||| ||||| |||||||| |||||||| Sbjct 2030771 AGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 2030712 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| ||||| ||||| ||||| | |||| || ||| Sbjct 2030711 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCC 2030652 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| |||||| |||| | | |||||||| | ||| ||||| | || Sbjct 2030651 TTGTCTTGGATTTTAGCTTTCACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTG 2030592 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||||||||| || || |||||||| || Sbjct 2030591 ATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 2030551 Score = 138 bits (152), Expect = 1e-27 Identities = 165/222 (74%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||||| || || ||| ||||||||| ||||| ||||| || |||||||| Sbjct 2031660 AGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGT 2031601 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| ||||| ||||| || || | |||| || ||| Sbjct 2031600 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCC 2031541 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| || ||| |||| | || ||||| || | ||| || |||| Sbjct 2031540 TTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAA 2031485 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||||||||| ||||| |||||||| Sbjct 2031484 AGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 2031443 Score = 113 bits (124), Expect = 4e-20 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| ||| ||||| ||||| |||||||| || ||||| | || || Sbjct 2031218 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCTTCC 2031159 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||| ||||||||||| |||| ||||| ||||| | |||| || ||||| ||| | Sbjct 2031158 AACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGG 2031099 Query 41774 ATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || || ||| |||| | || |||||||| | ||| ||||| | || || || Sbjct 2031098 ATCTTGGCCTT----GACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGT 2031043 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || |||| ||||| ||||| |||||||| Sbjct 2031042 CTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2031010 >seq13143 Length=1991197 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || |||||||| ||| ||||||||| ||||| |||||||| Sbjct 1626615 GCCCCCACGAAGACGCAGGACGAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1626556 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||| ||||| ||||| ||||| ||||| | || Sbjct 1626555 CAGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGG 1626496 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||||||||| ||| || ||||| | | |||||||| | ||| || Sbjct 1626495 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAAC 1626436 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || ||||| || || || || |||||||| Sbjct 1626435 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1626388 Score = 118 bits (130), Expect = 1e-21 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| |||||||| ||||| || || || || ||||| Sbjct 1624811 AGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGACAGCGTGCGT 1624752 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | ||||||||| || || ||||| ||||| ||||| | || | || ||| Sbjct 1624751 CCATCTTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGGATGCCTTCC 1624692 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 ||||| |||||| |||| ||| || | ||||||| | ||| ||||| | || Sbjct 1624691 TTGTCTTGGATTTTA-GCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGT 1624633 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||||||||| ||||| |||||||| || Sbjct 1624632 GATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATCTT 1624591 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||| ||||| ||||| |||||||| || ||||| Sbjct 1626377 AGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGAGTGCGT 1626318 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || | ||| ||||||||||| |||| ||||| ||||| | |||| || ||| Sbjct 1626317 CCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCC 1626258 Query 41765 TTGTC 41769 || || Sbjct 1626257 TTATC 1626253 >seq1581 Length=2594311 Score = 120 bits (132), Expect = 3e-22 Identities = 161/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||||||||| ||| ||| ||||| ||||| ||||| || || ||||| Sbjct 1373180 AGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGA 1373239 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| ||||| ||||| | ||| ||||| | ||||| || || Sbjct 1373240 CCATCTTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCT 1373299 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| ||| ||| |||| | || |||||||| | ||| ||||| | Sbjct 1373300 TTGTCCTGGATCTTTGCCTT----GACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAG 1373355 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || || || || || |||||||| Sbjct 1373356 GGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1373397 >seq20611 Length=922441 Score = 104 bits (114), Expect = 2e-17 Identities = 158/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| ||||||||||||| ||| ||| || || ||||| ||||| || | ||||| Sbjct 520326 AGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGA 520385 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| |||||||| || |||| | ||| ||||| | ||||| | || Sbjct 520386 CCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATACCTTCT 520445 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCAC 41820 || ||| ||| || ||| |||| | || ||||| || | ||| ||||| | Sbjct 520446 TTATCCTGGATCTTAGCCTT----GACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAG 520501 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || |||| ||||| ||||| ||||||||| Sbjct 520502 GGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 520544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461808860858400