Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2020 93.3 5e-14 seq44 89.7 6e-13 seq3 86.0 8e-12 >seq2020 Length=103515 Score = 93.3 bits (102), Expect = 5e-14 Identities = 175/252 (69%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 83144 AACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGG 83203 |||||||| || ||||| || ||||| || | |||||| ||| ||| |||| | | | Sbjct 46254 AACTTCTCAAAATTCCAAGCGACGTCATTTCTGCACACAGGACTCCACACAATAAATTTG 46195 Query 83204 GGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAG 83263 |||||| ||| || | | || ||||| || || || ||| |||||| Sbjct 46194 GGGTCGTTCATGAAGGGCATTGGCTCATCGCTCGGGAATGGAAGTTTCTCCTTGAGGAAG 46135 Query 83264 GCGAAGAGCGGATGTGCC-CTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322 ||||||| || || | ||| | ||||| || || |||||| |||||| || || Sbjct 46134 ACGAAGAGAGGGTGAGTGGCTTTC-CCGTTCACGTCAACCTTCTCCAAGAGCTGGAATTT 46076 Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTG 83382 || || ||||| || ||||||||||| | ||||| ||| || | |||||| |||| || Sbjct 46075 AGGTTCAAAGCCATTGCCAGGACGGACATACTTCAAGGACGGAAGGATCTCTTCATT-TG 46017 Query 83383 GGC-GTTTTCCT 83393 | |||||||| Sbjct 46016 TACAGTTTTCCT 46005 >seq44 Length=3047392 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAAC-CCAAGCACTACCAGCCCCCGAGCTCCTAGG 83449 |||| || ||||||||||| || |||| | || || || || |||||| || | | | Sbjct 73804 CCTGATGTCCGAACTGGTTGCA-GGGAGCGCCCAGAACCACGAGCCCCTGATCAGCGTAG 73862 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 || | || |||||||||||||||||||| |||| ||| || | ||||| || ||||| Sbjct 73863 CGGCTGTGGAGCTCGTTCATCTGAGTGTAATCCCTGACTGTTGTGCCTCAAAGCGACGCC 73922 Query 83510 ACGTTCTCGATGAGCA 83525 || ||||| || |||| Sbjct 73923 ACATTCTCAATTAGCA 73938 >seq3 Length=9040279 Score = 86.0 bits (94), Expect = 8e-12 Identities = 177/259 (68%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||||| ||||| || | | ||| ||| |||| |||| | Sbjct 7650972 GAACTTCTCAAAGTTCCAGGAGACGTCATTCCTGTTCACCGGACTCCAGATGATGAATTT 7651031 Query 83203 GGGGTCGCTCACGAGCGTGCTCAT-GTCGTCGCTAGGCGCCGGCAGGGCCTCTCGT--AG 83259 ||| || | || | | | || |||||| || ||| ||||| | |||| | || Sbjct 7651032 GGGATCACCCATCAAGGA-CACAGAGTCGTCACTGGGCTGAGGCAG--CTTCTCCTTGAG 7651088 Query 83260 GAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAA 83319 ||| | || || || || || | ||||||| || || |||||| | || || Sbjct 7651089 GAACACAAACAGAGGGTGGGCGTTCTCACCGTTCACTTCCAGCTTCTCCAGAAGTTGGAA 7651148 Query 83320 GTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATT 83379 || ||||||||||| || ||||||||||| | |||||| || ||| || || |||| Sbjct 7651149 TTTTGGCTCGAAGCCATTTCCAGGACGGACATACTTCAGAGACAGCAGAATTTCATCATT 7651208 Query 83380 CTGGGCGTTTTCCTGGTGA 83398 || | ||| ||||| ||| Sbjct 7651209 CTTGCAGTTCTCCTGTTGA 7651227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608558783281080