Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1186 136 3e-27 seq110 136 3e-27 seq475 89.7 4e-13 >seq1186 Length=611208 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || | ||||| ||| || Sbjct 448876 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTC 448817 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct 448816 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG 448757 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| || ||| ||||||| ||| | || || Sbjct 448756 GATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTT 448697 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 448696 GCCAGTCAGCGTCTTCACAAAGATCTGCAT 448667 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || | ||||| |||||| Sbjct 453553 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCCTC 453494 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct 453493 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG 453434 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||| ||| || | || | |||||| || ||| ||||||| ||| | || || Sbjct 453433 GGTTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTT 453374 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 453373 GCCAGTCAGCGTCTTCACAAAGATCTGCAT 453344 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||| || ||||| |||||| Sbjct 454237 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTC 454178 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| |||||||||||||| ||||| ||||| |||||||| Sbjct 454177 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTG 454118 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||| ||||||| || | || || Sbjct 454117 GATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGGGATGGTCTT 454058 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || ||||| |||||||| Sbjct 454057 GCCAGTCAAGGTCTTCACAAAGATCTGCAT 454028 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| || | ||||| ||| || ||||| Sbjct 454458 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGC 454399 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| |||||||||||||| ||||| ||||| |||||||| || || Sbjct 454398 TTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 454339 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | || | |||||| || ||| ||||||| ||| | || ||||| ||| Sbjct 454338 GCCTTGACGTTCTCTATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 454279 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 | || || ||||| |||||||| Sbjct 454278 AAGGTCTTCACAAAGATCTGCAT 454256 Score = 105 bits (116), Expect = 6e-18 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || |||||||| || |||||||| || | ||||| ||| || Sbjct 449332 CACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTC 449273 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| ||||||||||| || ||||| ||||| || |||||| Sbjct 449272 CAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTG 449213 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | |||||| | || | || ||||| | || | |||| Sbjct 449212 GATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGT-TCCACCTCAAGAGTGATGGTTT 449154 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | || |||| || || ||||| ||||||||| || Sbjct 449153 TACCAGTCAAGGTCTTCACAAAGATCTGCATGCCT 449119 Score = 102 bits (112), Expect = 7e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || | ||||| ||| || Sbjct 454009 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTC 453950 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| ||||||||||| || ||||| ||||| || |||||| Sbjct 453949 CAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTG 453890 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | || | |||||| | || | || ||||| | || | |||| Sbjct 453889 GATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGT-TCCACCTCAAGAGTGATGGTTT 453831 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 | || |||| || || ||||| ||||||||| || Sbjct 453830 TACCAGTCAAGGTCTTCACAAAGATCTGCATGCCT 453796 >seq110 Length=2794823 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || | ||||| |||||| Sbjct 1818094 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCCTC 1818153 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| |||| |||||||||||||| ||||| ||||| ||||||||| Sbjct 1818154 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTG 1818213 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| || ||| ||||||| ||| | || || Sbjct 1818214 GATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTT 1818273 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 1818274 GCCAGTCAGCGTCTTGACGAAGATCTGCAT 1818303 Score = 136 bits (150), Expect = 3e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || |||||||| || |||||||| ||| || ||||| ||| || ||||| Sbjct 1819506 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTGC 1819565 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||| ||||||||||| || ||||| ||||| ||||||||| ||||| Sbjct 1819566 TTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATTTTA 1819625 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || | || | |||||| || ||| ||||||| ||| | || ||||| ||| Sbjct 1819626 GCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 1819685 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| |||||||| Sbjct 1819686 AGCGTCTTCACAAAGATCTGCAT 1819708 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| || ||||| |||||| ||||| Sbjct 1817189 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCCTCCAGCTGC 1817248 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| ||||||||||| || ||||| ||||| |||||||| || || Sbjct 1817249 TTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 1817308 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | || | |||||| || ||| ||||||| ||| | || ||||| ||| Sbjct 1817309 GCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 1817368 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 | || || ||||| |||||||| Sbjct 1817369 AAGGTCTTCACAAAGATCTGCAT 1817391 Score = 122 bits (134), Expect = 8e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || |||||||| || |||||||| ||| || ||||| ||| || ||||| Sbjct 1817873 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTGC 1817932 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||| ||||||||||| || ||||| ||||| |||||||| || || Sbjct 1817933 TTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 1817992 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | || | |||||| || ||| ||||||| ||| | || ||||| ||| Sbjct 1817993 GCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 1818052 Query 118716 AGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || || ||||||||| || Sbjct 1818053 AGCGTCTTGACGAAGATCTGCATGCCT 1818079 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || ||||||||||| || ||||| ||| || Sbjct 1817410 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTC 1817469 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| | ||||||||||| ||||| ||||| |||||||| Sbjct 1817470 AAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTG 1817529 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||| || || | || | ||||| Sbjct 1817530 GATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTTTT 1817589 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || || ||||| Sbjct 1817590 TCCAGTCAGCGTCTTGACGAAGATTTGCAT 1817619 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || ||||||||||| || ||||| ||| || Sbjct 1818815 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTC 1818874 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| | ||||||||||| ||||| ||||| |||||||| Sbjct 1818875 AAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTG 1818934 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | |||||| || ||| || || | || | ||||| Sbjct 1818935 GATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTTTT 1818994 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || || ||||| Sbjct 1818995 TCCAGTCAGCGTCTTGACGAAGATTTGCAT 1819024 Score = 98.7 bits (108), Expect = 9e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| || | ||||| |||||| Sbjct 1818550 CACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCCTC 1818609 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| || |||||| |||| |||||||||||||| ||||| ||||| |||||||| Sbjct 1818610 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTC 1818666 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || |||||||| || |||||||| || | ||||| ||| || ||| | Sbjct 1818329 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGGGAGGGTGCGTCCATCTTCCAGCGGC 1818388 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || ||||| |||| ||||||||||| || ||||| ||||| || |||||| || || Sbjct 1818389 TTACCAGCAAAGATCAGACGCTGCTGCTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTG 1818448 Query 118656 TGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| | || | || ||||| | || | ||||| || || Sbjct 1818449 GCCTTGACATTCTCTATGGTGTCACTTGGT-TCCACCTCAAGAGTGATGGTTTTACCAGT 1818507 Query 118715 CAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || ||||| ||||||||| || Sbjct 1818508 CAAGGTCTTCACAAAGATCTGCATGCCT 1818535 >seq475 Length=1111492 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||| || | || ||||||||||| |||||||| || || ||||| ||| Sbjct 249650 CAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGACCATC 249591 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| || || |||| | | |||||| || || || ||||| || ||||| Sbjct 249590 TTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTC 249531 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||| | ||| ||||| | ||| | || Sbjct 249530 CTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 249471 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||||| |||| || || || || ||||||||| || Sbjct 249470 CTTGCCTGTCAAGGTCTTGACGAAGATCTGCATGCCT 249434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433665028867684