Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq362 96.9 3e-15 seq15 82.4 7e-11 >seq362 Length=1554118 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| || |||||||| || || || || | ||| ||||| | ||||| || | Sbjct 600552 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 600611 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 ||| ||| || || | ||| || || ||||||||||| ||||| || || |||||||| | Sbjct 600612 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 600671 Query 14346 C 14346 | Sbjct 600672 C 600672 >seq15 Length=4212223 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || ||||| | | || |||||||||||||| ||||||||||| || ||||| Sbjct 2564304 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGAATGTTTTCCATTGCAATCTGG 2564245 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCT-CTGAGTAAA 14579 ||||| || || || | ||||| | | ||| |||| ||||||||| Sbjct 2564244 AAACCGTAGAAGCAACGGGCTTCGGTCACTTGGACCTCCTGAGTAAA 2564198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482157020958360