Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq453 111 1e-19 seq110 91.5 1e-13 seq1186 89.7 4e-13 seq475 89.7 4e-13 >seq453 Length=1395482 Score = 111 bits (122), Expect = 1e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 ||||| | ||||||| || | | ||||| || | || || ||||| || |||||| Sbjct 606264 TTTTGCTTGCCTCCCCTGAGACGCAATACCAGATGCAAGGTGGACTCTTTCTGGATGTTG 606323 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 ||||| | || ||| || |||||||| |||||||| ||| |||| || || || ||| Sbjct 606324 TAGTCAGACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGA 606383 Query 18210 TCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCG 18269 || ||| | |||||| || || || | | ||| || | ||| ||||| | Sbjct 606384 TCAGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCCTTTACGTTCTCAATGGTGTCGCTT 606443 Query 18270 GGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||| |||| ||||||| | ||||| || | ||||| ||||| || ||||| | | Sbjct 606444 GGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATCTAT 606503 Query 18330 AAAC 18333 |||| Sbjct 606504 AAAC 606507 Score = 95.1 bits (104), Expect = 9e-15 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| || | || || ||||| || ||||||||||| | | Sbjct 606045 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 606104 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||||| |||||||| ||| |||| || || || ||||| ||| Sbjct 606105 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 606164 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || || | | |||||| | ||| ||||||| |||||| Sbjct 606165 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 606224 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 |||| |||||| | ||||| || | || || || || ||||| Sbjct 606225 TCAAGGGTGATTGTCTTGCCAGTGAGAGTCTTGACGAAGTTTTGC 606269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| || | || || ||||| || ||||||||||| | | Sbjct 605817 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 605876 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || |||||||| |||||||| ||| |||| || || || || || ||| Sbjct 605877 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 605936 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | |||||| || || || | | ||| || | ||| ||||||| |||||| Sbjct 605937 ATGCCTTCTTTGTCCTGGATCTTTGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACC 605996 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| |||||| | ||||| || | || || || || || ||||| Sbjct 605997 TCAAGGGTGATTGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 606043 >seq110 Length=2794823 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || ||||| || ||||||||||||| || ||| | |||||||| || Sbjct 1819506 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTGC 1819565 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || | || || || || | ||||||||| || |||| | Sbjct 1819566 TTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATTT-T 1819624 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | ||| ||||| | |||||| || | ||||||| | ||||| || Sbjct 1819625 AGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 1819684 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTTA 18330 || || || ||||| || ||||| |||| Sbjct 1819685 CAGCGTCTTCACAAAGATCTGCATCTTTA 1819713 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || ||||| || ||||||||||||| || ||| | |||||||| || Sbjct 1817873 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCATCTTCCAGCTGC 1817932 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || | || || || || | ||||||||| || || | Sbjct 1817933 TTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 1817992 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 |||||| | ||| ||||||| |||||| || | ||||||| | ||||| ||| Sbjct 1817993 GCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 1818052 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || || || || ||||| Sbjct 1818053 AGCGTCTTGACGAAGATCTGCAT 1818075 >seq1186 Length=611208 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| || | || |||| ||| || || || || || || ||||||||||| | Sbjct 448893 CCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 448834 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||| || ||||| ||| |||| || | || ||||| || Sbjct 448833 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGAGGA 448774 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || |||| | || ||||| | ||| ||||| | |||||| Sbjct 448773 ATGCCTTCCTTGTCTTGGATTT-TAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAAC 448715 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTA 18330 || | ||||||| | ||||| |||| || || ||||| || ||||| |||| Sbjct 448714 CTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTA 448662 >seq475 Length=1111492 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || |||||||| ||||||||||| | || ||| || |||||||| |||||||| Sbjct 249634 GTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGACCATCTTCCAGCTGTTTGCCG 249575 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | || || || || ||| | |||||| || || || | |||| Sbjct 249574 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTG 249515 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||| | ||||| |||| ||||||| | ||||| ||||| || Sbjct 249514 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTC 249455 Query 18309 TTTACAAAAATTTGCAT 18325 || || || || ||||| Sbjct 249454 TTGACGAAGATCTGCAT 249438 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || || ||||| || ||||||||||| | || ||| | |||||||| |||||||| Sbjct 248266 GTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGCTGTTTGCCG 248207 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | || || || || ||| | |||||| || || || | |||| Sbjct 248206 GCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTG 248147 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||| | ||||| |||| ||||||| | || || || | ||| Sbjct 248146 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTT 248087 Query 18309 TTTACAAAAATTTGCATTTTTAAAC 18333 || ||||| || ||||| | ||||| Sbjct 248086 TTGACAAAGATCTGCATCTATAAAC 248062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379199398453365