Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 3e-13 seq362 87.8 4e-12 >seq15 Length=4212223 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || |||||||| || ||||||||||||||| ||| | || || || ||||||||| Sbjct 2564751 GTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGG 2564810 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAG 102022 | ||||| || || | ||||||| ||||||| |||||||||| Sbjct 2564811 CTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAG 2564855 >seq362 Length=1554118 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| || |||||||| || ||||||||||||||| || | || || || ||||||| Sbjct 600677 TTGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCTTCTATTTTCT 600618 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || | ||||| || || | ||||||| ||||||| ||||||||| Sbjct 600617 GGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGA 600572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989187437509535