Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3467 127 3e-24 seq124 122 1e-22 seq362 114 2e-20 seq588 105 8e-18 seq2831 102 1e-16 seq15 102 1e-16 seq987 96.9 4e-15 seq566 96.9 4e-15 >seq3467 Length=20596 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| Sbjct 3149 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 3090 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 |||||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 3089 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 3030 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGG 63412 ||||||| ||| ||||| | | |||| || Sbjct 3029 GGGTTCCAGGTACATGGCAAAAGCTCCTGG 3000 >seq124 Length=2461953 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| Sbjct 435249 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCT 435308 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 |||||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 435309 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 435368 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGG 63412 || |||| ||| || || | | |||| || Sbjct 435369 GGGCTCCAGGTACATAGCAAAAGCTCCTGG 435398 >seq362 Length=1554118 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || || || |||||||| ||||| || || | ||| | Sbjct 600552 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 600611 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || ||||| || || |||||||||||||||||||| || |||||||| | Sbjct 600612 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 600671 Query 33724 CAATAAGTCTCTCTCC 33739 | | || |||||| || Sbjct 600672 CCACAACTCTCTCCCC 600687 >seq588 Length=1544836 Score = 105 bits (116), Expect = 8e-18 Identities = 127/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 1276201 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 1276260 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 1276261 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1276320 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62281 |||| | || ||||| | ||| ||||| | ||| ||| | || ||||| Sbjct 1276321 TTTGCGAGATCTCCCACACAGTCTTATACAGCTC-CTTCAGGTCATCTGG 1276369 >seq2831 Length=39540 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 25067 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 25126 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 25127 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 25186 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62281 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 25187 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 25235 >seq15 Length=4212223 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | || || || || |||||||| ||||| || || | ||| | Sbjct 2564874 CCTCATCTCTGCTGATAAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 2564815 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || ||||| || || || ||||||||||||||||| || |||||||| | Sbjct 2564814 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2564755 Query 33724 CAATAAGTCTCTCTCC 33739 | | | |||||| || Sbjct 2564754 CCACCACTCTCTCCCC 2564739 >seq987 Length=405153 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || || | |||||||||||||| ||||| | || | Sbjct 241995 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 241936 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| | |||| ||| |||||||| || |||||||| ||||| ||||| ||||| | Sbjct 241935 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 241876 Query 33724 CAATAAGTCTCTCTCC 33739 | | | || |||||| Sbjct 241875 CTACTAATCGCTCTCC 241860 Score = 95.1 bits (104), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 34074 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 34133 |||||||| || || |||||||| ||||| || | || | ||| ||||| ||||||||| Sbjct 239009 ATATCCACCTCCTCAACTGTCCAGAATGAAGCTTGAGCTTGTTTGTACATTTTCCAGATG 238950 Query 34134 TCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||| |||| || || |||||||| ||||||| ||||| ||| Sbjct 238949 TCAGGATACTGAATAGGGAAAATGACAAATCGCTTTGGGTTT 238908 >seq566 Length=1676785 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || || | |||||||||||||| ||||| | || | Sbjct 224425 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 224484 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| | |||| ||| |||||||| || |||||||| ||||| ||||| ||||| | Sbjct 224485 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 224544 Query 33724 CAATAAGTCTCTCTCC 33739 | | | || |||||| Sbjct 224545 CTACTAATCGCTCTCC 224560 Score = 86.0 bits (94), Expect = 8e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 34074 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 34133 |||| ||| || || || ||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 226382 ATATTCACCTCCTCAACAGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 226441 Query 34134 TCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||| |||| || || || ||||| ||||||| ||||| ||| Sbjct 226442 TCAGGATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTT 226483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629571364936560