Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq566 113 4e-20 seq987 111 1e-19 seq15 107 2e-18 seq588 86.0 6e-12 >seq566 Length=1676785 Score = 113 bits (124), Expect = 4e-20 Identities = 109/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| | ||||| || || |||||||| || | || | ||||||||||| |||| || Sbjct 224423 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTT 224481 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 | || | ||| | || ||||||||||| ||||| ||||| || || ||||| ||||||| Sbjct 224482 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAA 224541 Query 11769 ATGCTACTACTCTTTCTCC 11787 ||||||||| || ||||| Sbjct 224542 ATGCTACTAATCGCTCTCC 224560 >seq987 Length=405153 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || | || | ||||||||||| |||| ||| || Sbjct 241993 TCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCTTC 241934 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| | || ||||||||||| ||||| ||||| || || ||||| |||||||||||| Sbjct 241933 AACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATGCT 241874 Query 11774 ACTACTCTTTCTCC 11787 |||| || ||||| Sbjct 241873 ACTAATCGCTCTCC 241860 >seq15 Length=4212223 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || || ||||| || || || | ||| ||||| | ||||| || ||| Sbjct 2564872 TCATCTCTGCTGATAAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 2564813 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || |||| |||||| || ||||||||||| ||||| |||||||| ||||| || Sbjct 2564812 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 2564753 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 2564752 ACCACTCTCTCCCC 2564739 >seq588 Length=1544836 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| |||||||| | ||||| | ||| || || ||||||||||| || || || Sbjct 1276658 ACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGATT 1276717 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 |||||||| || | | || |||| || || ||||| ||||| || || | || || Sbjct 1276718 GACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAGA 1276777 Query 37258 CTATTTCTCAATCCATG 37274 || || | || |||||| Sbjct 1276778 CTGTTACGCACTCCATG 1276794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468341624372880