Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq987 107 2e-18 seq566 107 2e-18 seq362 105 6e-18 seq15 82.4 7e-11 >seq987 Length=405153 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || || | || | ||| ||||||| |||| ||| | Sbjct 241995 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 241936 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| | || ||||||||||| || || ||||| || || || ||||| ||||| | Sbjct 241935 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 241876 Query 14014 CTATTAATCGTTCTCCAAA 14032 ||| |||||| ||||| || Sbjct 241875 CTACTAATCGCTCTCCTAA 241857 >seq566 Length=1676785 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || || | || | ||| ||||||| |||| ||| | Sbjct 224425 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 224484 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| | || ||||||||||| || || ||||| || || || ||||| ||||| | Sbjct 224485 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 224544 Query 14014 CTATTAATCGTTCTCCAAA 14032 ||| |||||| ||||| || Sbjct 224545 CTACTAATCGCTCTCCTAA 224563 >seq362 Length=1554118 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || |||||||| || || || || | ||| ||||| | ||||| || | Sbjct 600552 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 600611 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 ||| ||| || || | |||||| |||||||||||||| ||||| || || |||||||| | Sbjct 600612 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 600671 Query 14014 C 14014 | Sbjct 600672 C 600672 Score = 86.0 bits (94), Expect = 6e-12 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| || ||||| | | || |||||||||||||| ||||||||||| || ||||| Sbjct 601119 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATGGCAATCTGG 601178 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAA 14247 ||||| || ||||| | ||||| | | ||| |||||| ||||||| Sbjct 601179 AAACCGTAGAAGCAACGGGCTTCAGTCACTTGGACTTCCTGAGTAAA 601225 >seq15 Length=4212223 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| || ||||| | | || |||||||||||||| ||||||||||| || ||||| Sbjct 2564304 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGAATGTTTTCCATTGCAATCTGG 2564245 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAA 14247 ||||| || ||||| | ||||| | | ||| || ||| ||||||| Sbjct 2564244 AAACCGTAGAAGCAACGGGCTTCGGTCACTTGGACCTCCTGAGTAAA 2564198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479540444341800