Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq475 87.8 1e-12 >seq475 Length=1111492 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | || | | ||| | ||| | ||| ||| || || | ||||| || || Sbjct 248297 GCCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 248238 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| || | || |||| |||||||||||||| ||||| | ||| || || | || Sbjct 248237 CAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 248178 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || |||| | ||||| | ||| ||||||| | ||| || Sbjct 248177 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAAC 248118 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || || ||||| ||||| || ||||| Sbjct 248117 CTCAAGGGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 248070 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||||| ||| | ||| ||| ||||| | ||||| || |||||||| || | || Sbjct 249649 AACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGACCATCT 249590 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 |||| |||||||||||||| ||||| | ||| || || | || | |||||||| || Sbjct 249589 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCC 249530 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| | ||||| | ||| ||||||| | ||| || || | || || || Sbjct 249529 TGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTC 249470 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || | || || || || || ||||| Sbjct 249469 TTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 249438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381224226318066