Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2831 102 1e-16 seq588 98.7 1e-15 >seq2831 Length=39540 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| | | ||||| |||||| || || || ||||| ||||||||| Sbjct 27593 CTGTGGTATGCCATCATTGAGTCTCAGACAGAGACCGGCACACCCTACATGCTCTACAAG 27534 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || || ||||| |||||||| | || ||||||||||||| || || || Sbjct 27533 GATGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGTAACTTG 27474 Query 97299 TGCACGGAAATTGTAGAGTACGCC 97322 ||||| || |||||||||||| || Sbjct 27473 TGCACAGAGATTGTAGAGTACACC 27450 >seq588 Length=1544836 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| | | ||||| |||||| || || || ||||| || |||||| Sbjct 1280439 CTGTGGTATGCCATCATTGAGTCTCAGACAGAGACCGGCACACCCTACATGCTTTACAAG 1280380 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || || ||||| |||||||| | || |||||||||| || || || || Sbjct 1280379 GATGCCTGCAACCGCAAAAGCAACCAGCAGAACCTGGGCACCATTAAATGCAGTAACTTG 1280320 Query 97299 TGCACGGAAATTGTAGAGTACGCC 97322 ||||| ||||||||||||||| || Sbjct 1280319 TGCACAGAAATTGTAGAGTACACC 1280296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740769473642520