Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq110 95.1 9e-15 seq1186 91.5 1e-13 seq453 84.2 2e-11 seq475 82.4 6e-11 >seq110 Length=2794823 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || | ||| |||||||| ||||| || |||||||| || Sbjct 1818305 CCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGGG 1818364 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | | || ||||| | |||| ||| || || || ||| Sbjct 1818365 AGGGTGCGTCCATCTTCCAGCGGCTTACCAGCAAAGATCAGACGCTGCTGCTCAGGAGGA 1818424 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| || ||| ||| ||| | |||||||| || || ||| || Sbjct 1818425 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCCACC 1818484 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||||||||| |||| || || ||||| || ||||| Sbjct 1818485 TCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1818531 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || | || |||||||| || || || ||||||||||| Sbjct 1817393 CCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 1817452 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || ||||||||| | ||||| || || || || ||| Sbjct 1817453 AGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGAGGA 1817512 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| || | || ||||| || || || || Sbjct 1817513 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACT 1817572 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| || ||||| || || || || ||||||||| Sbjct 1817573 TCCAAAGTGATGGTTTTTCCAGTCAGCGTCTTGACGAAGATTTGCATA 1817620 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || | || |||||||| || || || ||||||||||| Sbjct 1818798 CCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAC 1818857 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || ||||||||| | ||||| || || || || ||| Sbjct 1818858 AGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGAGGA 1818917 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| || ||| ||| || | || ||||| || || || || Sbjct 1818918 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACT 1818977 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| || ||||| || || || || ||||||||| Sbjct 1818978 TCCAAAGTGATGGTTTTTCCAGTCAGCGTCTTGACGAAGATTTGCATA 1819025 >seq1186 Length=611208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| ||||| || |||||||| || || | | | ||||| | || Sbjct 449325 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGC 449266 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| ||| || ||||| ||||| ||||||||||| || ||| Sbjct 449265 TTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTG 449206 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | |||||||| || || ||| || || | || ||||||||||| ||| Sbjct 449205 GCCTTGACATTCTCTATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTACCAGTC 449146 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| || ||||| Sbjct 449145 AAGGTCTTCACAAAGATCTGCAT 449123 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||||| | | || | || || ||||| || || || |||||||| || Sbjct 454026 CCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 453967 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || || ||||| | |||| ||| || ||||| ||| Sbjct 453966 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 453907 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| || ||| ||| ||| | |||||||| || || ||| || Sbjct 453906 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCCACC 453847 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||||||||| |||| || || ||||| || ||||| Sbjct 453846 TCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 453800 >seq453 Length=1395482 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| | |||||| ||||| || |||||||| || || | | | ||| Sbjct 606288 AATACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCT 606347 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||||||||| | |||| | || || || ||||| ||||||||||| Sbjct 606348 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTGTCC 606407 Query 15272 CAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || ||||| |||||| | || ||||| ||||| || || || | ||| ||||| Sbjct 606408 TGGATCTTTGC-CTTTACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATGGT 606466 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| ||||| || ||||| Sbjct 606467 CTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 606499 >seq475 Length=1111492 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTTCTAAT 15217 ||| | |||||| ||||| || |||||||| || | ||| || | ||||| | Sbjct 248273 ATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAG--ACAATGTGCGGCCATCTTCCAGC 248216 Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 |||||||| || | ||||| | || ||||| ||||| ||||||||||| || Sbjct 248215 TGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATC 248156 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 || ||| || | || ||||| ||||| || || || | ||| ||||| ||||| Sbjct 248155 TTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTACCA 248096 Query 15338 GTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| ||||| || ||||| Sbjct 248095 GTGAGGGTTTTGACAAAGATCTGCAT 248070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362041141476657