Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq475 102 5e-17 seq453 102 5e-17 seq110 89.7 3e-13 >seq475 Length=1111492 Score = 102 bits (112), Expect = 5e-17 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 33136 ATCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTA 33195 |||| ||| || || | |||||||||| |||||| || ||||||||||| || ||||| Sbjct 249671 ATCTGAACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTA 249612 Query 33196 ATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTC 33255 |||||||| || | || |||| || || || ||| || || | |||||||| Sbjct 249611 GTCAGACAATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTC 249552 Query 33256 CGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 | ||| ||||||||||| || | | | ||| || || | | ||| |||||| | Sbjct 249551 AGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCC---TTGACGTTCTCAATGGTGTCGCT 249495 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || | ||| || || || || || || || || | || || ||||| || |||||| Sbjct 249494 TGGCTCAACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 249437 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||| | |||||| || |||||||| || || ||||| |||||||| || | Sbjct 248512 CGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA 248453 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || || ||| || || | |||||||| | ||| ||||||||||| Sbjct 248452 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 248393 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| |||||| | || | ||| || || || Sbjct 248392 TCCTGGATCTTAGCC---TTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 248336 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| | || || ||||| || |||||| Sbjct 248335 ATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATG 248297 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||| | |||||| || |||||||| || || ||||| |||||||| || | Sbjct 248284 CGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA 248225 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || || ||| || || | |||||||| | ||| ||||||||||| Sbjct 248224 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 248165 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| |||||| | || | ||| || || || Sbjct 248164 TCCTGGATCTTAGCC---TTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 248108 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||| || || || ||||| Sbjct 248107 ATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 248070 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||| | |||||| || |||||||| || || ||||| |||||||| || | Sbjct 249196 CGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA 249137 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || || ||| || || | |||||||| | ||| ||||||||||| Sbjct 249136 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 249077 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| |||||| | || | ||| || || || Sbjct 249076 TCCTGGATCTTAGCC---TTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 249020 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || | || || ||||| || |||||| Sbjct 249019 ATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 248981 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||| | |||||| || |||||||| || || ||||| |||||||| || | Sbjct 249424 CGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA 249365 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || || ||| || || | |||||||| | ||| ||||||||||| Sbjct 249364 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 249305 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| |||||| | || | ||| || || || Sbjct 249304 TCCTGGATCTTAGCC---TTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 249248 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || | || || ||||| || |||||| Sbjct 249247 ATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 249209 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/217 (69%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||| | |||||| || |||||||| || || ||||| |||||||| || | Sbjct 248968 CGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAATGTGCGGCCA 248909 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || || ||| || || | |||||||| | ||| ||||||||||| Sbjct 248908 TCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 248849 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| |||||| | || | ||| || || || Sbjct 248848 TCCTGGATCTTAGCC---TTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTG 248792 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCA 33368 || || || || || | || || ||||| || |||| Sbjct 248791 ATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCA 248755 >seq453 Length=1395482 Score = 102 bits (112), Expect = 5e-17 Identities = 166/238 (70%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 33136 ATCTTCACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTA 33195 |||| ||| || || | |||| ||||| |||||| || |||||||| || || ||||| Sbjct 605810 ATCTGAACCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTA 605869 Query 33196 ATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTC 33255 ||||||| || | || |||| || || ||| ||| || | | |||||||| Sbjct 605870 GTCAGACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTC 605929 Query 33256 CGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 | ||| ||||||||||| || | | | ||| ||||| | | ||| ||||| | Sbjct 605930 AGGGGGAATGCCTTCTTTGTCCTGGATCTTTGCC---TTTACGTTCTCAATGGTGTCACT 605986 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||| | ||| || || || || || || || || ||||| || ||||| || |||||| Sbjct 605987 GGGCTCAACCTCAAGGGTGATTGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCATG 606044 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| |||||| || |||||||| || || ||||| ||||||| || | Sbjct 606057 CGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCA 606116 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || ||| ||| || | | ||||| || | ||| ||||||||||| Sbjct 606117 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTG 606176 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| ||||| |||| | ||| || || || Sbjct 606177 TCCTGGATCTTTGCC---TTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 606233 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || ||||| || ||||| ||||| || Sbjct 606234 ATTGTCTTGCCAGTGAGAGTCTTGACGAAGTTTTGCTTG 606272 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||| |||||| || |||||||| || || ||||| ||||||| || | Sbjct 606285 CGCAATACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCA 606344 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| || || ||| ||| || | | ||||| || | ||| ||||||||||| Sbjct 606345 TCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTG 606404 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| ||||| | | ||| |||||| | || | || || || || Sbjct 606405 TCCTGGATCTTTGCC---TTTACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTG 606461 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||| || || || ||||| Sbjct 606462 ATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 606499 >seq110 Length=2794823 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || | ||||| || | || ||||| || || || ||||||||||| Sbjct 1817392 ACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 1817451 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || || || || | ||||| ||| || || || || ||||| || | || Sbjct 1817452 CAGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGAGG 1817511 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 |||||||| || || | | | ||| || || | | ||| ||||| |||| | Sbjct 1817512 AATGCCTTCCTTGTCCTGGATCTTGGCC---TTCACGTTCTCAATGGTGTCACTGGGCTC 1817568 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| ||| || |||||||| || || || || ||||| |||||||| Sbjct 1817569 AACTTCCAAAGTGATGGTTTTTCCAGTCAGCGTCTTGACGAAGATTTGCAT 1817619 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | || | ||||| || | || ||||| || || || ||||||||||| Sbjct 1818797 ACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 1818856 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || || || || || | ||||| ||| || || || || ||||| || | || Sbjct 1818857 CAGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGAGG 1818916 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 |||||||| || || | | | ||| || || | | ||| ||||| |||| | Sbjct 1818917 AATGCCTTCCTTGTCCTGGATCTTGGCC---TTCACGTTCTCAATGGTGTCACTGGGCTC 1818973 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| ||| || |||||||| || || || || ||||| |||||||| Sbjct 1818974 AACTTCCAAAGTGATGGTTTTTCCAGTCAGCGTCTTGACGAAGATTTGCAT 1819024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318656085664746