Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq475 163 7e-35 seq1186 143 6e-29 seq110 131 4e-25 seq566 105 2e-17 seq362 104 5e-17 seq987 102 2e-16 seq15 100 7e-16 seq1185 86.0 1e-11 >seq475 Length=1111492 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| || || || |||||||| || || |||||| Sbjct 248299 ATGCCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA 248240 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| || ||||| || ||||| || | |||||| || ||||| Sbjct 248239 GACAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGG 248180 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| ||||| || || || || || | ||| ||||| || || Sbjct 248179 GGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCA 248120 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||||||||| || ||||| ||||| |||||||| Sbjct 248119 ACCTCAAGGGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 248070 >seq1186 Length=611208 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || |||||||| || || | || ||| Sbjct 454467 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCT 454408 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | ||| ||||||||||| || ||||| || ||| Sbjct 454407 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 454348 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || |||| ||| ||||| || || ||||| || || || ||| Sbjct 454347 TGGATCTTGGCCTTGACGTTCTCTATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTC 454288 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || ||||| |||||||| Sbjct 454287 TTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 454256 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 448896 ATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 448837 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || || | ||| ||||||||| Sbjct 448836 GAGAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGA 448777 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || || || ||||| || || || | ||| ||||| || || Sbjct 448776 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCA 448717 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || || || ||||| |||||||| || Sbjct 448716 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 448664 Score = 132 bits (146), Expect = 1e-25 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 453573 ATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 453514 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || |||||||| || || | ||| ||||||||| Sbjct 453513 GAGAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGA 453454 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || | || ||||| || || || | ||| ||||| || || Sbjct 453453 GGAATGCCTTCCTTGTCTTGGGTTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCA 453394 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || || || ||||| |||||||| || Sbjct 453393 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 453341 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 449124 ATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 449065 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || ||||| || || || | ||||||||||||| Sbjct 449064 GAGAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCAGGA 449005 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| || || || || Sbjct 449004 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCA 448945 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || || || |||||||| Sbjct 448944 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 448895 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 453801 ATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 453742 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || ||||| || || || | ||||||||||||| Sbjct 453741 GAGAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCAGGA 453682 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| || || || || Sbjct 453681 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCA 453622 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || || || |||||||| Sbjct 453621 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 453572 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || || ||||| || || ||||| Sbjct 454257 ATACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCG 454198 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || ||||| || || || | ||| ||||||||| Sbjct 454197 GACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGA 454138 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| ||||| || || Sbjct 454137 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCA 454078 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || | || ||||| ||||| | || || ||||| |||||||| Sbjct 454077 ACCTCGAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 454028 >seq110 Length=2794823 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 1818074 ATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 1818133 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || |||||||| || || | ||| ||||||||| Sbjct 1818134 GAGAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGA 1818193 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || || || ||||| || || || | ||| ||||| || || Sbjct 1818194 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCA 1818253 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || || || |||||||| Sbjct 1818254 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 1818303 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || || ||||| || || || ||| Sbjct 1817390 ATACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCA 1817449 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || ||||| || || | || ||| ||||||||| Sbjct 1817450 GACAGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGA 1817509 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| || || || || Sbjct 1817510 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCA 1817569 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || ||||| || || || || || || ||||| Sbjct 1817570 ACTTCCAAAGTGATGGTTTTTCCAGTCAGCGTCTTGACGAAGATTTGCAT 1817619 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || || ||||| || || || ||| Sbjct 1818795 ATACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCA 1818854 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || ||||| || || | || ||| ||||||||| Sbjct 1818855 GACAGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGA 1818914 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || || || | ||| || || || || Sbjct 1818915 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCA 1818974 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || || || ||||| || || || || || || ||||| Sbjct 1818975 ACTTCCAAAGTGATGGTTTTTCCAGTCAGCGTCTTGACGAAGATTTGCAT 1819024 Score = 86.0 bits (94), Expect = 1e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 1818530 ATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 1818589 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || || || || ||||| || || || | ||| ||||||||| Sbjct 1818590 GAGAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGA 1818649 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || || ||||| || ||||| ||||| || || || || || | ||| || Sbjct 1818650 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC 1818699 >seq566 Length=1676785 Score = 105 bits (116), Expect = 2e-17 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| | ||||| || ||||| || || ||||| || ||||| || || || ||||| Sbjct 224560 GGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTTGCT 224501 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || |||| |||||||||||||||||||| ||||| ||| | || | ||| || ||| | Sbjct 224500 GCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCCAATGAACTC 224441 Query 269246 ATAAGCAGGGACGAAGGTTTACACT 269270 || ||||| || | ||||| | ||| Sbjct 224440 ATCAGCAGAGATG-AGGTTAAAACT 224417 >seq362 Length=1554118 Score = 104 bits (114), Expect = 5e-17 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | || |||||||| ||||| ||||| || |||||||| ||||||||||| Sbjct 600685 GGAGAGAGTT--GTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCT 600628 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 |||| || ||| | ||||| ||||| || ||||| ||| | || ||||| || ||| | Sbjct 600627 TCTATTTTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTT 600568 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 600567 ATCAGCAGAGATGA 600554 >seq987 Length=405153 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| | ||||| || ||||| || || ||||| || ||||| || || || ||||| Sbjct 241860 GGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTTGCT 241919 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || |||| |||||||||||||||||||| ||||| ||| | || | ||| || ||| | Sbjct 241920 GCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCCAATGAACTC 241979 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 241980 ATCAGCAGAGATGA 241993 >seq15 Length=4212223 Score = 100 bits (110), Expect = 7e-16 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | || |||||||| ||||| ||||| || |||||||| ||||||||||| Sbjct 2564741 GGAGAGAG--TGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCT 2564798 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 |||| || ||| | ||||| ||||| || ||||| ||| | || ||||| || || | Sbjct 2564799 TCTATTTTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAGCTT 2564858 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 2564859 ATCAGCAGAGATGA 2564872 >seq1185 Length=519126 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||| || ||||| || || || | ||||| || || ||||| |||||||| || Sbjct 346903 TTCTGAATGTTGTAGTCGGAGAGGGTGCGTCCGTCCTCCAGCTGTTTACCAGCAAAGATC 346844 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458 |||||||| ||||||||||| |||||| Sbjct 346843 AGCCTCTGCTGATCAGGAGGGATTCCT 346817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150936992563116