Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq453 102 8e-17 seq1186 95.1 1e-14 seq110 95.1 1e-14 seq475 89.7 5e-13 seq588 84.2 2e-11 >seq453 Length=1395482 Score = 102 bits (112), Expect = 8e-17 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| || | |||||| | || | || ||| | Sbjct 606499 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGC 606440 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || |||||| ||||||||||| || || || ||||| Sbjct 606439 GACACCATTGAGAACGTAAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGATCAG 606380 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946 || || || || | | |||||||| || ||||||| | | | || ||| ||||| | Sbjct 606379 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTC--TGACTACA 606322 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 |||| || ||||| || || | |||||||| || | || || ||||| || Sbjct 606321 ACATCCAGAAAGAGTCCACCTTGCATCTGGTATTGCGTCTCAGGGGAGGCAA 606270 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 ||||| || | |||||| | || | || | | |||||||| ||| | ||||| | Sbjct 606247 ACTGGCAAGACAATCACCCTTGAGGTTGAGCCCAGTGACACCATTGAGAACGTCAAGGCA 606188 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 ||||| ||||||||||| || || || ||||| || || || || | | |||||| Sbjct 606187 AAGATCCAGGACAAAGAAGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCTGGCAAA 606128 Query 26913 CAACTCGAAGATGATAG-AAAC-GTCAGCGACTATAACATTCAAAAAGAATCTACTATCC 26970 || || ||||||| | | | || ||| ||||| ||||| || ||||| || || | | Sbjct 606127 CAGCTGGAAGATGGTCGCACACTGTC--TGACTACAACATCCAGAAAGAGTCCACCTTGC 606070 Query 26971 ATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||| ||| | || || ||||| Sbjct 606069 ATCTGGTGCTGCGTCTCAGGGGAGG 606045 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | ||||| || | |||||| | || | || | | Sbjct 606043 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACAATCACCCTTGAGGTTGAGCCCAGT 605984 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || |||||| ||||||||||| || || || || || Sbjct 605983 GACACCATTGAGAACGTAAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 605924 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG-AAAC-GTCAGCGACTATA 26946 || || || || | | |||||||| || ||||||| | | | || ||| ||||| | Sbjct 605923 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTC--TGACTACA 605866 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||| || ||||| || || | |||||||| ||| | || || ||||| Sbjct 605865 ACATCCAGAAAGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGG 605817 >seq1186 Length=611208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| ||| | ||||| | || | ||| ||| Sbjct 449123 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 449182 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||||||||| || ||||| || || Sbjct 449183 GACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 449242 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | | || || || || ||||||| | | | || ||||| ||| Sbjct 449243 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAAC 449302 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || ||| |||| ||||| || | || || ||||| Sbjct 449303 ATCCAGAAAGAGTCCACTCTCCACCTGGTGCTCCGCCTCAGGGGAGG 449349 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| ||| | ||||| | || | ||| ||| Sbjct 453800 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 453859 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||||||||| || ||||| || || Sbjct 453860 GACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 453919 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | | || || || || ||||||| | | | || ||||| ||| Sbjct 453920 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAAC 453979 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || ||| |||| ||||| || | || ||||| || Sbjct 453980 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGTCTGAGAGGTGG 454026 >seq110 Length=2794823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| ||| | ||||| | || | ||| ||| Sbjct 1818531 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 1818472 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||||||||| || ||||| || || Sbjct 1818471 GACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGAGCAG 1818412 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | | || || | || ||||||| | | | || ||||| ||| Sbjct 1818411 CAGCGTCTGATCTTTGCTGGTAAGCCGCTGGAAGATGGACGCACCCTCCCTGACTACAAC 1818352 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || ||||||| |||||| | || ||||| || Sbjct 1818351 ATCCAGAAAGAGTCCACCCTCCATCTCGTCCTGCGTCTGAGAGGTGG 1818305 >seq475 Length=1111492 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| | ||||| || | |||||| | || | || ||| | Sbjct 248070 ATGCAGATCTTTGTCAAAACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC 248129 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||||||||| || || || || || Sbjct 248130 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 248189 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||||||||| || ||||||| | | | ||||| ||| Sbjct 248190 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 248249 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || | ||||| || ||| | || || ||||| Sbjct 248250 ATCCAGAAAGAGTCCACCTTGCATCTTGTGCTGCGTCTCAGGGGAGG 248296 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || || || || | |||||| | || | || ||| | Sbjct 249438 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 249497 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||||||||| || || || || || Sbjct 249498 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 249557 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||||||||| || ||||||| | | | | ||||| ||| Sbjct 249558 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGTCGCACATTGTCTGACTACAAC 249617 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||||| || || | |||||||| || | || || ||||| Sbjct 249618 ATCCAAAAAGAGTCCACCTTGCATCTGGTGTTGCGTCTCAGGGGAGG 249664 >seq588 Length=1544836 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 147461 CACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAA 147520 ||| ||| |||| || ||||||||||| ||| ||| | || |||||| ||||||||| Sbjct 1276657 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGAT 1276716 Query 147521 CGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566 ||||| ||||| || || ||||| ||||| | || || |||||| Sbjct 1276717 TGACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATG 1276762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478475260951440