Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2831 109 1e-18 seq588 105 2e-17 seq716 87.8 5e-12 seq122 87.8 5e-12 >seq2831 Length=39540 Score = 109 bits (120), Expect = 1e-18 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||| || |||||||| ||| Sbjct 27602 GCTCAGCAGCTGTGGTATGCCATCATTGAGTCTCAGACAGAGACCGGCACACCCTACATG 27543 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| ||| | |||||||||||| |||||||||| |||| || || || | Sbjct 27542 CTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGC 27483 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||| | || || |||||| | || |||||| Sbjct 27482 AGTAACTTGTGCACAGAGATTGTAGAGTACACC 27450 >seq588 Length=1544836 Score = 105 bits (116), Expect = 2e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||| || |||||||| ||| Sbjct 1280448 GCTCAGCAGCTGTGGTATGCCATCATTGAGTCTCAGACAGAGACCGGCACACCCTACATG 1280389 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| ||| | ||||||||||| |||||||||| |||| || || ||| | Sbjct 1280388 CTTTACAAGGATGCCTGCAACCGCAAAAGCAACCAGCAGAACCTGGGCACCATTAAATGC 1280329 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||| | || || || ||| | || |||||| Sbjct 1280328 AGTAACTTGTGCACAGAAATTGTAGAGTACACC 1280296 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || ||||||||||| || || ||||| |||||||| || ||||| |||| |||| ||| Sbjct 1276767 GCTCCCATGCCCACTGCCTCCACTGCTCAGATCCTGGGCAACAATGAGTCAATCGAGCCG 1276708 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 | ||| ||||| | || ||||| | ||||| || ||||| |||| ||| Sbjct 1276707 TATACTAGCAACATCTACACACGCAGAGTTCTGTCTGGAGAGTTTCAGGT 1276658 >seq716 Length=616396 Score = 87.8 bits (96), Expect = 5e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 12822 TGTTGATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGT 12881 ||| | ||||||||||||| |||||| ||||| |||||||||||||| | || |||| Sbjct 101569 TGTCGTTCCAAATGTCAGACCATCCATATCTTCTGTTGCTGTGGCATAAACCTTCCCTGA 101510 Query 12882 TTTTACATATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAAC 12929 ||| || |||||||| | || || ||||||||||| || | ||| Sbjct 101509 TTTCACCAGAGCAGCACAGCTCGCCTCCGCCTCACATGGAGCCTTAAC 101462 >seq122 Length=3147476 Score = 87.8 bits (96), Expect = 5e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 12822 TGTTGATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGT 12881 ||||| ||||||||||||| ||||| ||||| || ||||||||||| | || |||| Sbjct 2044403 TGTTGTTCCAAATGTCAGACCGTCCATATCTTCTGTCGCTGTGGCATAAACCTTCCCTGA 2044462 Query 12882 TTTTACATATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAAC 12929 ||| || |||||||| | || |||||||||||||| || | ||| Sbjct 2044463 TTTCACCAGAGCAGCACAGCTCGCCTCGGCCTCACATGGAGCCTTAAC 2044510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302831298558614