Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq453 95.1 1e-14 seq475 86.0 5e-12 >seq453 Length=1395482 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || ||| | || |||||| | | | Sbjct 606499 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGC 606440 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || |||||| |||||||||||||| || || ||||| Sbjct 606439 GACACCATTGAGAACGTAAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGATCAG 606380 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| ||||| | | ||||| || || ||||||| Sbjct 606379 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATG 606343 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || ||| | || || ||| ||| |||||||| ||| | ||||| | Sbjct 606247 ACTGGCAAGACAATCACCCTTGAGGTTGAGCCCAGTGACACCATTGAGAACGTCAAGGCA 606188 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| |||||||||||||| || || ||||| ||||| ||||| | | ||||| Sbjct 606187 AAGATCCAGGACAAAGAAGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCTGGCAAA 606128 Query 24135 CAACTCGAAGATG 24147 || || ||||||| Sbjct 606127 CAGCTGGAAGATG 606115 >seq475 Length=1111492 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | ||||| || | || ||| | || || ||| | | | Sbjct 248070 ATGCAGATCTTTGTCAAAACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC 248129 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| ||||| |||||||||||||| || || || || Sbjct 248130 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 248189 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | |||||| || || ||||||| | | | | || || ||| Sbjct 248190 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 248249 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| || || | ||| | ||| Sbjct 248250 ATCCAGAAAGAGTCCACCTTGCATCTTGTG 248279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429772113367935