Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2611 113 3e-20 seq289 113 3e-20 seq1186 109 4e-19 seq343 105 4e-18 seq475 98.7 7e-16 seq110 98.7 7e-16 seq117 95.1 8e-15 seq45 95.1 8e-15 seq799 86.0 4e-12 >seq2611 Length=82667 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 8970 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTGACTATCGGTCTCGT 9029 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 9030 GCCAGTATTTAGCCTTA 9046 >seq289 Length=2154649 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2060088 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTGACTATCGGTCTCGT 2060029 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 2060028 GCCAGTATTTAGCCTTA 2060012 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 2067081 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTGACTATCGGCCTCGT 2067022 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 2067021 GCCAGTATTTAGCCTTA 2067005 >seq1186 Length=611208 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||| | ||||| || |||||| |||||| || || ||||| |||| Sbjct 454028 TACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 453969 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | || || || ||||| || || || || || || | | Sbjct 453968 AGAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAG 453909 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| || || ||| ||||||| | || || | ||| | Sbjct 453908 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCCA 453849 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | || || |||||||| |||||||| ||||| || ||||||||| Sbjct 453848 CCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCATG 453799 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||| | ||||| || |||||| |||||| || || ||||| || | Sbjct 454256 TACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 454197 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | || || || || || || || || || ||||| | | Sbjct 454196 ACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCAGGAG 454137 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| || || ||| || |||| | || || | |||| Sbjct 454136 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAA 454077 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | | || || || || |||||||| ||||| || |||||||| Sbjct 454076 CCTCGAGGGGGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 454028 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| || |||||| ||| || || || ||||| ||||| | ||| | || || Sbjct 449332 CACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTC 449273 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | || || || ||||| || || || || || || | || | |||||||||||| Sbjct 449272 CAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTG 449213 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||| ||||||| | || || | ||| || || | || || ||||| Sbjct 449212 GATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTT 449153 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| |||||||| ||||| || ||||||||| Sbjct 449152 ACCAGTCAAGGTCTTCACAAAGATCTGCATG 449122 >seq343 Length=2000535 Score = 105 bits (116), Expect = 4e-18 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||| |||||||||||||||||||||| | || ||||| || |||||||| Sbjct 1717483 AAGCCCATTCTCTTGGCTGTGGTTTCGCTAGATCGCAGGTAGGGACAGTGGGAATCTCGT 1717542 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||| |||||||||||||||||| Sbjct 1717543 TCATCCATTCATGCACGTCACTAATTAGATGAC 1717575 Score = 100 bits (110), Expect = 2e-16 Identities = 78/93 (84%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||| |||||||||||||||||||||| | || ||||| || |||| ||| Sbjct 1716789 AAGCCCATTCTCTTGGCTGTGGTTTCGCTAGATCGCAGGTAGGGACAGTGGGAATCCCGT 1716848 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||| |||||||||||||||||| Sbjct 1716849 TCATCCATTCATGCACGTCACTAATTAGATGAC 1716881 >seq475 Length=1111492 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || || | ||||||||||| ||| | ||| ||| ||||| || ||||| ||||| Sbjct 249665 ACCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGA 249606 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| || | || || | ||||| |||||||| || | | || || || | ||| Sbjct 249605 CAATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 249546 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||||||||||| || || ||| || |||| | || || | ||||| Sbjct 249545 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAAC 249486 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||||||| || ||||| ||||||||| Sbjct 249485 CTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 249437 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || || | ||||| ||| | ||| | ||| ||| || || || ||||| |||||| Sbjct 248524 CCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 248465 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | ||||| |||||||| || | | || || || | ||| Sbjct 248464 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 248405 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || || ||| || |||| | || || | ||||| Sbjct 248404 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACC 248345 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||||||||| || ||||| ||||||||| Sbjct 248344 TCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCATG 248297 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || || | ||||| ||| | ||| | ||| ||| || || || ||||| |||||| Sbjct 249208 CCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 249149 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | ||||| |||||||| || | | || || || | ||| Sbjct 249148 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 249089 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || || ||| || |||| | || || | ||||| Sbjct 249088 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACC 249029 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||||||| || ||||| ||||||||| Sbjct 249028 TCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 248981 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || || | ||||| ||| | ||| | ||| ||| || || || ||||| |||||| Sbjct 249436 CCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 249377 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | ||||| |||||||| || | | || || || | ||| Sbjct 249376 AATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 249317 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || || ||| || |||| | || || | ||||| Sbjct 249316 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACC 249257 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||||||| || ||||| ||||||||| Sbjct 249256 TCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCATG 249209 >seq110 Length=2794823 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||| | ||||| || || ||| |||||| || || |||||||||| Sbjct 1817391 TACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAG 1817450 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | || || || || || || | || || ||||| | | Sbjct 1817451 ACAGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGAG 1817510 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| || || |||||| |||| | || || | |||| Sbjct 1817511 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAA 1817570 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || |||| || || ||||| || ||||| Sbjct 1817571 CTTCCAAAGTGATGGTTTTTCCAGTCAGCGTCTTGACGAAGATTTGCAT 1817619 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||| | ||||| || || ||| |||||| || || |||||||||| Sbjct 1818796 TACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAG 1818855 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| ||| | || || | || || || || || || | || || ||||| | | Sbjct 1818856 ACAGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGAG 1818915 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| |||||| || || |||||| |||| | || || | |||| Sbjct 1818916 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAA 1818975 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || |||| || || ||||| || ||||| Sbjct 1818976 CTTCCAAAGTGATGGTTTTTCCAGTCAGCGTCTTGACGAAGATTTGCAT 1819024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| || | ||| || ||| ||| || || || ||||| |||| Sbjct 1818303 TACCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 1818362 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| | || || | | || || ||||| || || || || || || | | Sbjct 1818363 GGAGGGTGCGTCCATCTTCCAGCGGCTTACCAGCAAAGATCAGACGCTGCTGCTCAGGAG 1818422 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| || || ||| ||||||| | || || | ||| | Sbjct 1818423 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCCA 1818482 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | || || |||||||| |||||||| ||||| || ||||||||| Sbjct 1818483 CCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCATG 1818532 >seq117 Length=2317239 Score = 95.1 bits (104), Expect = 8e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || ||||| || || || | || |||||||| ||||||||| ||| || || Sbjct 1576034 CCAACTAAGTATTTTGGCTGTGAGTTGGGGGCTCAGACTCAGTTTGATGCCAAGAATGAC 1575975 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || |||||||| ||| | | ||| ||||||||| | || || || || Sbjct 1575974 CGCTACATTGTAAACGGATCCCATGAAGCCAACAAACTGCAGGACATGCTGGATGGATTC 1575915 Query 6441 ATTCGCAAGTTTGTGCTGTG 6460 || | ||||||||||||||| Sbjct 1575914 ATCCACAAGTTTGTGCTGTG 1575895 >seq45 Length=2394175 Score = 95.1 bits (104), Expect = 8e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || ||||| || || || | || |||||||| ||||||||| || || || Sbjct 289519 CCAACTAAGTATTTTGGCTGTGAGTTGGGGGCTCAGACTCAGTTTGATGCTAAGAATGAC 289578 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| |||||||| ||| | | ||| ||||||||| | || || || || Sbjct 289579 CGCTACATCGTAAACGGATCCCATGAAGCCAACAAACTGCAGGACATGCTGGATGGATTC 289638 Query 6441 ATTCGCAAGTTTGTGCTGTG 6460 || | ||||||||||||||| Sbjct 289639 ATCCACAAGTTTGTGCTGTG 289658 >seq799 Length=545315 Score = 86.0 bits (94), Expect = 4e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||| || || || || | || || || || ||||||||| ||| || || Sbjct 532768 CCCACCAAATTCTTTGGTTGTGAGTTGGGAGCCCAAACCCAGTTTGATACCAAGAATGAC 532709 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| || ||||| ||| | | ||| ||||| ||| | || || || || Sbjct 532708 CGCTACATCGTCAATGGATCTCATGAGGCAAACAAACTGCAAGACATGCTAGATGGATTC 532649 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||| |||||||||||||||| || || || || || || || || Sbjct 532648 ATTCATAAGTTTGTGCTGTGTCCTGAGTGTGACAATCCTGAAACTGA 532602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334819522000187