Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3467 127 3e-24 seq124 122 1e-22 seq987 102 1e-16 seq588 102 1e-16 seq566 102 1e-16 seq15 102 1e-16 seq2831 96.9 4e-15 seq362 82.4 1e-10 >seq3467 Length=20596 Score = 127 bits (140), Expect = 3e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| Sbjct 3149 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCT 3090 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 |||||||| || || || ||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 3089 CTGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCA 3030 Query 63187 CGGTTCCAAGTATATGGCCATAACTCCAGG 63216 ||||||| ||| ||||| | | |||| || Sbjct 3029 GGGTTCCAGGTACATGGCAAAAGCTCCTGG 3000 >seq124 Length=2461953 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||| ||||| ||||||||||| ||||| || || ||| |||||||| | ||| Sbjct 435249 CTCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCT 435308 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 |||||||| || || |||||||||||||| || ||||| | | ||| ||| ||||||| Sbjct 435309 CTGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCA 435368 Query 63187 CGGTTCCAAGTATATGGCCATAACTCCAGG 63216 || |||| ||| || || | | |||| || Sbjct 435369 GGGCTCCAGGTACATAGCAAAAGCTCCTGG 435398 Score = 86.0 bits (94), Expect = 8e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || ||||| || | ||||||||||||||||| ||||| || ||||| || |||||| Sbjct 435955 GTGCCGGCATTGAAGAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCAGAGAGCAGATTG 436014 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || || || ||||||| | || ||| | ||| ||||| || | || | ||| | | Sbjct 436015 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACGGACACTCTCATCAGC 436074 Query 63587 ATGTGCTGAGGTCTTTCAACGA 63608 ||||| || || | ||| ||| Sbjct 436075 ATGTGTTGTGGCCGCTCAGCGA 436096 >seq987 Length=405153 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 241995 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 241936 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| | Sbjct 241935 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 241876 Query 32803 CAATAAGTCTCTCTCC 32818 | | | || |||||| Sbjct 241875 CTACTAATCGCTCTCC 241860 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 33153 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 33212 |||||||| || || |||||||| ||||| || | || | ||| ||||| ||||||||| Sbjct 239009 ATATCCACCTCCTCAACTGTCCAGAATGAAGCTTGAGCTTGTTTGTACATTTTCCAGATG 238950 Query 33213 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 ||| |||| ||||| || ||||| ||||||| ||||| |||| Sbjct 238949 TCAGGATACTGAATAGGGAAAATGACAAATCGCTTTGGGTTTT 238907 >seq588 Length=1544836 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 1276201 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGTGGATGT 1276260 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | || || || || || ||||||||||| |||||||||||||| |||| || |||| Sbjct 1276261 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1276320 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62085 |||| | || ||||| | ||| ||||| | ||| ||| | || ||||| Sbjct 1276321 TTTGCGAGATCTCCCACACAGTCTTATACAGCTC-CTTCAGGTCATCTGG 1276369 >seq566 Length=1676785 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 224425 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 224484 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| | Sbjct 224485 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 224544 Query 32803 CAATAAGTCTCTCTCC 32818 | | | || |||||| Sbjct 224545 CTACTAATCGCTCTCC 224560 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 33153 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 33212 |||| ||| || || || ||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 226382 ATATTCACCTCCTCAACAGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 226441 Query 33213 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255 ||| |||| ||||| |||||||| ||||||| ||||| |||| Sbjct 226442 TCAGGATACTGAATAGGAAAAATGACAAATCGCTTTGGGTTTT 226484 >seq15 Length=4212223 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | || ||||| || |||||||| ||||| || || | ||| | Sbjct 2564874 CCTCATCTCTGCTGATAAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 2564815 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 2564814 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2564755 Query 32803 CAATAAGTCTCTCTCC 32818 | | | |||||| || Sbjct 2564754 CCACCACTCTCTCCCC 2564739 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || || |||||||| ||||| |||||||| || ||||||||||| || || Sbjct 2564311 ATCTTTGATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGAATGTTTTCCATTGC 2564252 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGT 33013 || || || ||||||||||| | || ||||| Sbjct 2564251 AATCTGGAAACCGTAGAAGCAACGGGCTTCGGT 2564219 >seq2831 Length=39540 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 25067 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 25126 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 | | || || || || || ||||||||||| |||||||||||||| |||| || |||| Sbjct 25127 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 25186 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62085 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 25187 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 25235 >seq362 Length=1554118 Score = 82.4 bits (90), Expect = 1e-10 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || || |||||||| ||||| |||||||| || || |||||||| ||||| Sbjct 601112 ATCTTTGATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATGGC 601171 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 || || || ||||||||||| | || || || | || ||||| Sbjct 601172 AATCTGGAAACCGTAGAAGCAACGGGCTTCAGTCACTTGGACTTC 601216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633384273649200