Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq362 87.8 2e-12 seq15 84.2 2e-11 >seq362 Length=1554118 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || |||||| ||||||||||| |||| || ||||| ||||| ||| Sbjct 601119 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGGATGTTTTCCATGGCAATCTGG 601178 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || |||||||| || | ||||| || | || ||||| |||| ||||| ||| || Sbjct 601179 AAACCGTAGAAGCAACGGGCTTCAGTCACTTGGACTTCCTGAGTAAATCGCTCCAC 601234 >seq15 Length=4212223 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93605 GTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGA 93664 ||||| || || || |||||||| |||||||| | ||| ||||| || || ||||||||| Sbjct 2563816 GTCCAGAAGGAGGCCTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTGGA 2563757 Query 93665 AATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 || |||||||| || | ||||| || || || | ||||| Sbjct 2563756 AAAATGACAAAGCGGTGGGGGTTCTCCTTCAGAAGGGGCTC 2563716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || |||||| ||||||||||| || | || ||||||||||| ||| Sbjct 2564304 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGAATGTTTTCCATTGCAATCTGG 2564245 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 || |||||||| || | ||||| || | || || || |||| ||||| ||| || Sbjct 2564244 AAACCGTAGAAGCAACGGGCTTCGGTCACTTGGACCTCCTGAGTAAATCGCTCCAC 2564189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556643088309480