Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1186 84.2 2e-11 seq453 82.4 6e-11 >seq1186 Length=611208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||||||| || |||||||| || || ||| ||||||||| |||||||| || | Sbjct 454255 ACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 454196 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || |||| |||||||| || || ||||| ||||||||||| Sbjct 454195 CAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATC 454142 >seq453 Length=1395482 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || |||||||||||||| | ||| ||| ||||| |||||||| || | | Sbjct 606045 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 606104 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || | || |||| || ||||| ||||| ||||| | ||||||||| || Sbjct 606105 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 606164 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||||||||| Sbjct 606165 ATGCCTTCTTTGTCC 606179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396911044404154