Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq588 102 1e-16 seq2831 89.7 6e-13 seq362 86.0 7e-12 seq987 84.2 3e-11 seq566 84.2 3e-11 seq15 82.4 9e-11 >seq588 Length=1544836 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 114558 |||||||||| |||||||||| |||||| || ||||| || | ||||||||||| Sbjct 1280284 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 1280343 Query 114559 CAAGTTCTTTTGATTTGACTTTG-TGTTACACGCATCCTTGTAAAGCATGTATGGCGTCC 114617 || ||||| || ||| |||| ||| || |||||||||||||||||||| || || | Sbjct 1280344 CAGGTTCTGCTG-GTTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGC 1280402 Query 114618 CCGTCTCCGTTTGGGACT 114635 | ||||| || || |||| Sbjct 1280403 CGGTCTCTGTCTGAGACT 1280420 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | || || ||||| | |||||||||| |||| ||| || || |||||| Sbjct 1276691 TAGATGTTGCTAGTATACGGCTCGATTGACTCATTGTTGCCCAGGATCTGAGCAGTGGAG 1276750 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 114036 || ||||||||||| |||| || || |||||||| Sbjct 1276751 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTACG 1276785 >seq2831 Length=39540 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 114558 |||||||||| |||||||||| ||| || || ||||| || | || |||||||| Sbjct 27438 CTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCC 27497 Query 114559 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 114618 || ||||| || || ||| ||| || ||||||||||| |||||||| || || || Sbjct 27498 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 27557 Query 114619 CGTCTCCGTTTGGGACT 114635 ||||| || || |||| Sbjct 27558 GGTCTCTGTCTGAGACT 27574 >seq362 Length=1554118 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | ||| |||||||| |||||| ||||| |||||||| || | ||||| Sbjct 600552 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 600611 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 | | ||||||||| | | ||| || || || ||||||||||| |||||| Sbjct 600612 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACA 600661 >seq987 Length=405153 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | |||||||||||| ||| || ||||| ||||| || || | |||| Sbjct 241995 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 241936 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 |||||||| | || ||| |||||| || ||||||||||| || ||||| Sbjct 241935 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 241887 >seq566 Length=1676785 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | |||||||||||| ||| || ||||| ||||| || || | |||| Sbjct 224425 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 224484 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 |||||||| | || ||| |||||| || ||||||||||| || ||||| Sbjct 224485 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 224533 >seq15 Length=4212223 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | ||| || ||||| |||||| ||||| |||||||| || | ||||| Sbjct 2564874 CCTCATCTCTGCTGATAAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 2564815 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 | | ||||||||| | | ||| || || || ||||||||||| |||||| Sbjct 2564814 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACA 2564765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597120057143160