Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq110 109 4e-19 seq1186 107 1e-18 >seq110 Length=2794823 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| ||||| || ||||| || |||||||| ||| | Sbjct 1817621 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 1817680 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| || |||||||| ||| | ||||||||||| ||||| ||| Sbjct 1817681 AGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGA 1817740 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||||| ||| || | || || || ||||| || || Sbjct 1817741 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 1817800 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| || || ||||| || || || || || |||||| Sbjct 1817801 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATA 1817848 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| ||||| || ||||| || |||||||| ||| | Sbjct 1819026 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 1819085 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| || |||||||| ||| | ||||||||||| ||||| ||| Sbjct 1819086 AGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGA 1819145 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||||| ||| || | || || || ||||| || || Sbjct 1819146 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 1819205 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| || || ||||| || || || || || |||||| Sbjct 1819206 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATA 1819253 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| ||||| || ||||| || |||||||| ||| | Sbjct 1819254 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 1819313 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| || |||||||| ||| | ||||||||||| ||||| ||| Sbjct 1819314 AGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGA 1819373 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||||| ||| || || || || ||||| || || Sbjct 1819374 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTCCTCAATGGTGTCGCTGGGCTCAACC 1819433 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| || || ||||| || || || || || |||||| Sbjct 1819434 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCATA 1819481 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| ||||| || ||||| || |||||||| ||| Sbjct 1819482 CCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 1819541 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | || |||||||| | |||| |||||| ||||| ||| Sbjct 1819542 AGTGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 1819601 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||||| ||| ||| | || || || ||||| || || Sbjct 1819602 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACC 1819661 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || | ||| ||||| || || ||||| || || ||||| || ||||| ||| Sbjct 1819662 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTT 1819712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || ||||||||||| || | | | ||||| | || Sbjct 1817417 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCAAGCTGC 1817476 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||||||| | ||||| ||||| || || ||||| ||||||||||| || ||| Sbjct 1817477 TTGCCAGCGAAGATCAACCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 1817536 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || || || || || || || || |||||||| || ||| Sbjct 1817537 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTTTTTCCAGTC 1817596 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||||||| Sbjct 1817597 AGCGTCTTGACGAAGATTTGCATA 1817620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || ||||||||||| || | | | ||||| | || Sbjct 1818822 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCAAGCTGC 1818881 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||||||| | ||||| ||||| || || ||||| ||||||||||| || ||| Sbjct 1818882 TTGCCAGCGAAGATCAACCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTG 1818941 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || | || || || || || || || || || || |||||||| || ||| Sbjct 1818942 GCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTTTTTCCAGTC 1819001 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || || || || || ||||||||| Sbjct 1819002 AGCGTCTTGACGAAGATTTGCATA 1819025 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| ||| || | | | || || | || Sbjct 1817188 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGTCCATCCTCCAGCTG 1817247 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||||||| | |||| |||||| ||||| ||||| ||||||||||| || || Sbjct 1817248 CTTGCCAGCGAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 1817307 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | || || || ||||| || || || | ||| ||||| || || || Sbjct 1817308 GGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 1817367 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || |||||| Sbjct 1817368 CAAGGTCTTCACAAAGATCTGCATA 1817392 >seq1186 Length=611208 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| ||||| || ||||| || |||||||| ||| | Sbjct 449577 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAG 449518 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| || |||||||| ||| | ||||||||||| ||||| ||| Sbjct 449517 AGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGA 449458 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||||| ||| || | || || || ||||| || || Sbjct 449457 ATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCAACC 449398 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || ||||| || || || || || ||||| Sbjct 449397 TCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 449351 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || ||||| || |||||||| || ||| | | | ||||| | || Sbjct 449325 TGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGC 449266 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | |||| |||||| ||||| ||||| ||||| ||||| || ||| Sbjct 449265 TTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTG 449206 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | ||||| || || || ||| || || | || ||||||||||| ||| Sbjct 449205 GCCTTGACATTCTCTATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTACCAGTC 449146 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| || ||||| Sbjct 449145 AAGGTCTTCACAAAGATCTGCAT 449123 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| || ||| | | | ||||| | || Sbjct 454459 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTG 454400 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || |||||| | |||| |||||| || || ||||| ||||||||||| || || Sbjct 454399 CTTACCAGCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTT 454340 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || || | ||||| || ||||| || || || | ||| ||||| || || || Sbjct 454339 GGCCTTGACGTTCTCTATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGT 454280 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || |||||| Sbjct 454279 CAAGGTCTTCACAAAGATCTGCATA 454255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357255766301945