Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1186 102 7e-17 seq110 102 7e-17 seq453 93.3 4e-14 seq475 87.8 2e-12 >seq1186 Length=611208 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || || || ||||| || || ||| || || ||| ||| Sbjct 449559 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGTCCATCTTCC 449500 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || ||||| || ||| | ||||| || |||||||| || ||||||||||| || ||||| Sbjct 449499 AACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 449440 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||||| || | || | ||||||| | ||| || ||||| || | || || Sbjct 449439 ATTTTAGCTTTGA-CGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTT 449381 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || || || || || ||||| Sbjct 449380 GCCAGTCAGCGTCTTGACGAAGATCTGCAT 449351 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | ||| || || || || || ||||| ||||| || || || Sbjct 448896 ATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 448837 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || || || | |||| || ||||| || || Sbjct 448836 GAGAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGA 448777 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || ||||| ||||| ||||| || | || | ||||||| | ||| Sbjct 448776 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGA-CGTTCTCAATGGTGTCGCTGGGCTC 448718 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || ||||| || || || || ||||| || |||||| Sbjct 448717 AACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATC 448666 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | ||| || || || || || ||||| ||||| || || || Sbjct 453573 ATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 453514 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || || || | |||| || ||||| || || Sbjct 453513 GAGAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGA 453454 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || ||||| |||| ||||| || | || | ||||||| | ||| Sbjct 453453 GGAATGCCTTCCTTGTCTTGGGTTTTAGCTTTGA-CGTTCTCAATGGTGTCGCTGGGCTC 453395 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || ||||| || || || || ||||| || |||||| Sbjct 453394 AACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATC 453343 >seq110 Length=2794823 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || || || ||||| || || ||| || || ||| ||| Sbjct 1817639 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGTCCATCTTCC 1817698 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || ||||| || ||| | ||||| || |||||||| || ||||||||||| || ||||| Sbjct 1817699 AACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 1817758 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||||| || | || | ||||||| | ||| || ||||| || | || || Sbjct 1817759 ATTTTAGCTTTGA-CGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTT 1817817 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || || || || || ||||| Sbjct 1817818 GCCAGTCAGCGTCTTGACGAAGATCTGCAT 1817847 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || || || ||||| || || ||| || || ||| ||| Sbjct 1819044 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGTCCATCTTCC 1819103 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || ||||| || ||| | ||||| || |||||||| || ||||||||||| || ||||| Sbjct 1819104 AACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 1819163 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||||| ||||| || | || | ||||||| | ||| || ||||| || | || || Sbjct 1819164 ATTTTAGCTTTGA-CGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTT 1819222 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || || || || || ||||| Sbjct 1819223 GCCAGTCAGCGTCTTGACGAAGATCTGCAT 1819252 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || || || ||||| || || ||| || || ||| ||| Sbjct 1819272 ACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAGAGTGTGCGTCCATCTTCC 1819331 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || ||||| || ||| | ||||| || |||||||| || ||||||||||| || ||||| Sbjct 1819332 AACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 1819391 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| | || | ||||||| | ||| || ||||| || | || ||| Sbjct 1819392 ATTTTAGCTTTGACGTCCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTG 1819451 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || || ||||| Sbjct 1819452 CCAGTCAGCGTCTTGACGAAGATCTGCAT 1819480 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || ||||| || || || || || ||||| || || ||| ||| || | | ||| | Sbjct 1819500 ACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG--GACAGTGTGCGTCCATCTT 1819557 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| || || || || | |||| || |||||||| || ||||||||||| || |||| Sbjct 1819558 CCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTT 1819617 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | ||||| ||||| || | ||||||| | ||| || ||||| || | || | Sbjct 1819618 GGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATGGTCT 1819677 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||| || || || || ||||| || |||||| Sbjct 1819678 TGCCAGTCAGCGTCTTCACAAAGATCTGCATC 1819709 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | ||| || || || || || ||||| ||||| || || || Sbjct 1818074 ATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 1818133 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || || || | |||| || ||||| || || Sbjct 1818134 GAGAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCAGGA 1818193 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| || ||||| ||||| ||||| || | || | ||||||| | ||| Sbjct 1818194 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGA-CGTTCTCAATGGTGTCGCTGGGCTC 1818252 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || ||||| || || || || || || || ||||| Sbjct 1818253 AACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 1818303 >seq453 Length=1395482 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | ||| || ||||||| || || || || ||||| || || || | Sbjct 606273 CCTCCCCTGAGACGCAATACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA--G 606330 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || || | || ||| |||| ||||| || || | |||| | ||||| || || | Sbjct 606331 ACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 606390 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 ||||||||||||| || || || ||| || | || | || | ||||||| | |||| Sbjct 606391 GAATGCCTTCTTTGTCCTGGATCTTTGCCTTTA-CGTTCTCAATGGTGTCGCTTGGCTCG 606449 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || ||||| || || ||||| ||||| || |||||| Sbjct 606450 ACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATC 606500 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | || ||| ||||||| || || || || ||||| || || || | Sbjct 605817 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA--G 605874 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || || | || ||| |||| ||||| || || | |||| | |||||||| || | Sbjct 605875 ACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 605934 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 ||||||||||||| || || || ||| || | || | || | |||||| | ||| Sbjct 605935 GAATGCCTTCTTTGTCCTGGATCTTTGCCTTTA-CGTTCTCAATGGTGTCACTGGGCTCA 605993 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || ||||| || || || || ||||| Sbjct 605994 ACCTCAAGGGTGATTGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 606043 >seq475 Length=1111492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| | ||| | |||||| ||||||| || || || |||||||| || || || | Sbjct 249664 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCA--G 249607 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | || ||| |||| ||||| || || | ||||| | |||||||| || | Sbjct 249606 ACAATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGG 249547 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 ||||||||||||| || || || || |||| || | || | ||||||| | ||| Sbjct 249546 GAATGCCTTCTTTGTCCTGGATCTTAGCCTTGA-CGTTCTCAATGGTGTCGCTTGGCTCA 249488 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || | || || || || || ||||| Sbjct 249487 ACCTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 249438 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | || ||| ||||||| || || || || ||||| || || || Sbjct 248299 ATGCCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA 248240 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| |||| ||||| || || | ||||| | |||||||| | Sbjct 248239 --GACAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAG 248182 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | |||||||||||||| || || || || |||| || | || | ||||||| | | Sbjct 248181 GGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGA-CGTTCTCAATGGTGTCGCTTGGC 248123 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || | || || || || || ||||| ||||| || |||||| Sbjct 248122 TCAACCTCAAGGGTGATGGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCATC 248069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451826483698920