Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq188 122 1e-22 seq121 113 7e-20 seq260 102 1e-16 seq473 98.7 1e-15 seq6096 96.9 5e-15 seq454 96.9 5e-15 seq95 96.9 5e-15 >seq188 Length=1334943 Score = 122 bits (134), Expect = 1e-22 Identities = 172/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| |||||||||||||| || | |||||| |||| || || || || || || | Sbjct 24312 GATGAGACGAGTGGTTTGGAAGATTCTCTCGTCGTCCCAGTCGGGATGCTCTTGCTTCAT 24253 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 | ||| ||||| | |||||| || | ||||| |||| ||| |||||||| ||||| || Sbjct 24252 GATATCACAGACGCGGTTGTGCTCACGAAGCCAAATGGAGGCATACATCATCAAACCTGG 24193 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || |||||||| | |||| ||||| ||||| | | | || || || || | || | Sbjct 24192 AACCAAACCAAAGGCCTCATGGCCCACAGCAAATCTCTGTTCCTCTGGGACGTGAGGAGG 24133 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 ||| |||| | ||||||| || || || || ||||||| ||||| || | ||| Sbjct 24132 ATAGTGCATCTCCACCTGGACATCCTTCACCAATGGAGGATACACCTCACCATCCACAAC 24073 Query 9966 CT 9967 || Sbjct 24072 CT 24071 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 |||| | ||||||| ||| | |||||| | || || || ||||| |||| || || | Sbjct 24584 GAAAGTTGTCAGGCATCAGCGGGTGCCAGTGATACAGAGTGTTGAATTCGGATGCGATGC 24525 Query 9605 GGTTCTGGTACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAG 9663 ||||||||||||| ||| || | | ||| || | |||||||||||| | |||| |||| Sbjct 24524 GGTTCTGGTACTGGAAG-CGCTCATTGAAGAGAAGCTCCGGGTCAAACTTGAGCTTGAAG 24466 Query 9664 TGGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| || || | ||||| ||||| | ||| | ||| || ||||| || || Sbjct 24465 TGGTAGCCACTCAAGTGCTGAACATAGTCCTCGATCACAATTTTGATGGTCTCACC 24410 >seq121 Length=2434894 Score = 113 bits (124), Expect = 7e-20 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| |||||||||||||| || | | |||||| |||| || || || || || || | Sbjct 1926010 GATGAGACGAGTGGTTTGGAAGATCCTCTCGTCGTCCCAGTCGGGATGCTCTTGCTTCAT 1925951 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 | ||| ||||| | |||||| || | ||||| ||||| || |||||||| ||||| || Sbjct 1925950 GATATCACAGACACGGTTGTGCTCACGAAGCCAAATGGTAGCATACATCATCAAACCTGG 1925891 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || | ||| || || |||| ||||| || || | | | || || || | | || | Sbjct 1925890 AACCAGACCGAAGACCTCATGGCCCACAGCGAATCTCTGTTCTTCTGGGATATGAGGAGG 1925831 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 ||| |||| | ||||||| || || || || ||||||| ||||| || | ||| Sbjct 1925830 ATAGTGCATCTCCACCTGGACATCCTTCACCAACGGAGGATACACCTCACCATCCACAAC 1925771 Query 9966 CT 9967 || Sbjct 1925770 CT 1925769 Score = 102 bits (112), Expect = 1e-16 Identities = 173/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 9443 TCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGT 9502 ||||| ||||||| ||||| || | | | || ||||| | | | | || || |||| Sbjct 1926377 TCTGTTTAGTGAAGGATTCCACCATGTTGCGGATGCCGTGTTCGGTTAAAATAGAGTTGT 1926318 Query 9503 TGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACA 9562 | | || || || | || || || | ||| || |||| | ||||||| || Sbjct 1926317 TAAACACAAACTGGTGGTGGCCGTAGACCTGGTCCTGGATCTGAAAGTTGTCAGGCATCA 1926258 Query 9563 GAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGG 9622 ||| |||||| | || || || ||||| |||| || || ||||||||||||||||| | Sbjct 1926257 GAGGGTGCCAGTGATACAGAGTGTTGAATTCGGATGCGATGCGGTTCTGGTACTGAAA-G 1926199 Query 9623 CGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGC 9681 || | | ||| || | ||| |||||||| | |||| ||||||||| || || | ||| Sbjct 1926198 CGCTCATTGAAGAGAAGCTCTGGGTCAAACTTGAGCTTGAAGTGGTAGCCACTCAAGTGC 1926139 Query 9682 TGGACATA 9689 || ||||| Sbjct 1926138 TGAACATA 1926131 >seq260 Length=1225460 Score = 102 bits (112), Expect = 1e-16 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || || || || || || | || || ||||| || |||||||||||| | Sbjct 1133507 GCAGTGTTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTACTTGGTTTCCAGTACTCA 1133448 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| || |||| || ||||| | ||| | || || |||| || | Sbjct 1133447 GGGGAACAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 1133388 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || |||||||| || | || || || || | |||||||| || || Sbjct 1133387 ATGGTCTCCCCAAAGATGGCGTTGGTCCTGGGCTTCTCAACCAGCAAGCCAGTATAAAGC 1133328 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || || | || || | |||| | || ||||| |||||||| || ||| Sbjct 1133327 TCCACAGCATCCACATGTCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 1133268 Query 9176 ACAA 9179 | || Sbjct 1133267 AAAA 1133264 >seq473 Length=2396145 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || || || || || || | || || |||||||| |||||||||||| | Sbjct 2321999 GCAGTATTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTTGGTTTCCAGTACTCT 2321940 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| || |||| || ||||| | ||| | || || |||| || | Sbjct 2321939 GGGGAACAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 2321880 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || |||||||| || | || || || || | | |||| || || Sbjct 2321879 ATGGTCTCCCCAAAGATGGCGTTGGTCCTGGGCTTCTCAACCAGCAGCCCAGCATAAAGC 2321820 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || || || || || | |||| | || ||||| |||||||| || ||| Sbjct 2321819 TCCACAGCATCCACATCCCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 2321760 Query 9176 ACAA 9179 | || Sbjct 2321759 AAAA 2321756 >seq6096 Length=10429 Score = 96.9 bits (106), Expect = 5e-15 Identities = 114/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 |||| || || | ||||| ||||||| |||||| || ||||| || ||||| |||| Sbjct 3303 TAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTAGGATGTTCTTGTT 3362 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | | | ||| || || | |||||| || | |||||| | |||||||||||| | | || Sbjct 3363 TCAAGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTGAGAC 3422 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTG 9874 |||||| | ||||||||||| || |||| || Sbjct 3423 CCGGCAGCAGGCCAAACACTTC-TTGCCCAATG 3454 >seq454 Length=846641 Score = 96.9 bits (106), Expect = 5e-15 Identities = 114/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 |||| || || | ||||| ||||||| |||||| || ||||| || ||||| |||| Sbjct 469581 TAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTAGGATGTTCTTGTT 469640 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | | | ||| || || | |||||| || | |||||| | |||||||||||| | | || Sbjct 469641 TCAAGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACATACTGAGAC 469700 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTG 9874 |||||| | ||||||||||| || |||| || Sbjct 469701 CCGGCAGCAGGCCAAACACTTC-TTGCCCAATG 469732 >seq95 Length=2768803 Score = 96.9 bits (106), Expect = 5e-15 Identities = 114/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 9722 TAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTT 9781 |||| || || | ||||| ||||||| |||||| || ||||| || ||||| |||| Sbjct 436787 TAATAATGAGCCTGGTGGTCTGAAACAGCTGCTCATCCCCCCAGGTTGGATGTTCTTGTT 436846 Query 9782 TGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAAC 9841 | || | ||| || || | |||||| || | |||||| | ||||||||||| | | || Sbjct 436847 TCAGGATATCACACACACGGTTGTGCTCACGCAGCCACAAGGTGGCGTACAAACTGAGAC 436906 Query 9842 CCGGCACTAAACCAAACACTTCATTCCCCACTG 9874 |||||| | ||||||||||| || |||| || Sbjct 436907 CCGGCAGCAGTCCAAACACTTC-TTGCCCAATG 436938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723445049491800