Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq588 93.3 5e-14 seq2831 89.7 6e-13 seq987 84.2 3e-11 seq566 84.2 3e-11 >seq588 Length=1544836 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 |||||||||| |||||||||| |||||| || ||||| || | ||||||||||| Sbjct 1280284 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 1280343 Query 116520 CAAGTTCTTTTGATTTGACTTTG-TGTTACACGCATCCTTGTAGAGCATATATGGCGTCC 116578 || ||||| || ||| |||| ||| || ||||||||||| ||||| || || || | Sbjct 1280344 CAGGTTCTGCTG-GTTGCTTTTGCGGTTGCAGGCATCCTTGTAAAGCATGTAGGGTGTGC 1280402 Query 116579 CCGTCTCCGTTTGGGACT 116596 | ||||| || || |||| Sbjct 1280403 CGGTCTCTGTCTGAGACT 1280420 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | || || ||||| | |||||||||| |||| ||| || || |||||| Sbjct 1276691 TAGATGTTGCTAGTATACGGCTCGATTGACTCATTGTTGCCCAGGATCTGAGCAGTGGAG 1276750 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 || ||||||||||| |||| || || ||||| || Sbjct 1276751 GCAGTGGGCATGGGAGCCAGCAGCAGACTGTTACG 1276785 >seq2831 Length=39540 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 116519 |||||||||| |||||||||| ||| || || ||||| || | || |||||||| Sbjct 27438 CTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTGCC 27497 Query 116520 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCC 116579 || ||||| || || ||| ||| || ||||||||||||||||| || || || || Sbjct 27498 CAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 27557 Query 116580 CGTCTCCGTTTGGGACT 116596 ||||| || || |||| Sbjct 27558 GGTCTCTGTCTGAGACT 27574 >seq987 Length=405153 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | |||||||||||| ||| || || || ||||| || || | |||| Sbjct 241995 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 241936 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 |||||||| | || ||| |||||| |||||||||||||| || ||||| Sbjct 241935 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 241887 >seq566 Length=1676785 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | |||||||||||| ||| || || || ||||| || || | |||| Sbjct 224425 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 224484 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 |||||||| | || ||| |||||| |||||||||||||| || ||||| Sbjct 224485 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 224533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613267341691320