Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq588 109 9e-19 seq2831 107 3e-18 >seq588 Length=1544836 Score = 109 bits (120), Expect = 9e-19 Identities = 117/152 (77%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | ||||||| | |||||||| |||||| || || |||| Sbjct 1276195 CCTGCTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCAATGT 1276254 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||| || |||||||| ||||| ||||| ||| || | ||||| ||||| || | Sbjct 1276255 GGATGTTGAGGGACTGGCTCTGGTCAATGAA-GGCTCCTCTGTCTGCAGCCATCTTTAAG 1276313 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||||| ||||| ||||||||||| ||||| Sbjct 1276314 ATGGTCTTTTGCGAGATCTCCCACACAGTCTT 1276345 Score = 89.7 bits (98), Expect = 8e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 |||||| ||||| ||||| || | || ||| | | |||| | || | || |||| | Sbjct 1276660 CTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGATTGA 1276719 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||| |||||||| | |||||||| ||| ||| ||||||||||||||||| ||||| Sbjct 1276720 CTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAGACT 1276779 Query 204316 GTTGCGCACACC 204327 ||| ||||| || Sbjct 1276780 GTTACGCACTCC 1276791 >seq2831 Length=39540 Score = 107 bits (118), Expect = 3e-18 Identities = 114/148 (77%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| || || | ||||||| | |||||||| |||||| || || ||||| || Sbjct 25065 CTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGAT 25124 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||| || |||||||| ||||| ||||| ||| || | ||||| ||||| || | |||| Sbjct 25125 GTTGAGGGACTGGCTCTGGTCAATGAA-GGCTCCTCTGTCTGCAGCCATCTTTAAGATGG 25183 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || ||||||||||||||||| Sbjct 25184 TCTTTTGAGAGATCTCCCACACCGTCTT 25211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794844324135120