Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq27 105 3e-17 seq110 102 3e-16 seq451 96.9 1e-14 seq7 91.5 6e-13 seq1186 89.7 2e-12 seq1974 84.2 9e-11 >seq27 Length=3818123 Score = 105 bits (116), Expect = 3e-17 Identities = 272/414 (66%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 ||| ||||| | | ||||| | || ||||| ||||| || | ||| ||||| || Sbjct 417687 AGGGAAGCCTAAGGTACAAGTTGAGTACAAAGGAGAAACCAAGTCATTTTACCCTGAGGA 417628 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 ||| || || ||||| || || ||||| || | ||||| || | || | Sbjct 417627 AATCTCTTCCATGGTCCTGGTGAAGATGAAGGAGATTGCAGAGGCTTACCTGGGACATAA 417568 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 || || |||| || ||||| ||||| || ||||||||||| | || ||||||| || Sbjct 417567 GGTGACAAATGCTGTTATTACGGTTCCTGCCTATTTCAATGACTCCCAGAGGCAAGCGAC 417508 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||| || ||| || ||||| | ||||| || |||| || || || || ||||| Sbjct 417507 TAAAGACGCTGGAGTAATCGCTGGACTGAATGTCCTGAGAATCATCAACGAGCCCACAGC 417448 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491 || || | || || || || | ||| |||| | ||| || | | | Sbjct 417447 TGCAGCCATTGCCTAAGGCCTTGACAAAGGCAAAG---CTTCAGAGCGCAACGTCCTGAT 417391 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551 ||||| | || ||||| || |||| || | || | ||||||||||| | || Sbjct 417390 TTTTGACCTGGGCGGAGGCACCTTTGATGTGTCCATCCTGACCATTGAAGATGGCATCTT 417331 Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || ||||| || ||| || |||||||| || || || || |||| || Sbjct 417330 TGAGGTGAAGGCCACAGCTGGAGACACTCATCTGGGTGGGGAGGACTTTGACAA 417277 >seq110 Length=2794823 Score = 102 bits (112), Expect = 3e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| ||||| || ||| | || ||||| | | Sbjct 1817619 ATGCAAATCTTCGTCAAGACGCTGACTGGAAAAACCATCACTTTGGAAGTTGAGCCCAGT 1817560 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || || || || |||||||| |||||||||||||| Sbjct 1817559 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 1817500 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || ||| | || || || |||||||||||| | || || | ||||| || Sbjct 1817499 CAGCGGTTGATCTTCGCTGGCAAGCAGCTTGAAGATGGACGCACGCTGTCTGATTACAAC 1817440 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || || ||| | || | | |||||||| Sbjct 1817439 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGAGG 1817396 Score = 102 bits (112), Expect = 3e-16 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| ||||| || ||| | || ||||| | | Sbjct 1819024 ATGCAAATCTTCGTCAAGACGCTGACTGGAAAAACCATCACTTTGGAAGTTGAGCCCAGT 1818965 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || || || || |||||||| |||||||||||||| Sbjct 1818964 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAG 1818905 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || || ||| | || || || |||||||||||| | || || | ||||| || Sbjct 1818904 CAGCGGTTGATCTTCGCTGGCAAGCAGCTTGAAGATGGACGCACGCTGTCTGATTACAAC 1818845 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || || ||| | || | | |||||||| Sbjct 1818844 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGTCTGAGAGG 1818801 Score = 93.3 bits (102), Expect = 2e-13 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || || || ||||| | Sbjct 1819480 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1819421 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| ||||| ||||| |||||||| ||||||||||| || Sbjct 1819420 GACACCATTGAGGACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 1819361 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGA 391208 || ||||| || ||| | || ||||| | ||||||||| Sbjct 1819360 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGA 1819322 Score = 89.7 bits (98), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || || || ||||| | Sbjct 1817847 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1817788 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| ||||| ||||| |||||||| ||||||||||| || Sbjct 1817787 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 1817728 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGA 391208 || ||||| || ||| | || ||||| | ||||||||| Sbjct 1817727 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGA 1817689 Score = 89.7 bits (98), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || || || ||||| | Sbjct 1819252 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 1819193 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| ||||| ||||| |||||||| ||||||||||| || Sbjct 1819192 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 1819133 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGA 391208 || ||||| || ||| | || ||||| | ||||||||| Sbjct 1819132 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGA 1819094 >seq451 Length=848638 Score = 96.9 bits (106), Expect = 1e-14 Identities = 267/406 (66%), Gaps = 5/406 (1%) Strand=Plus/Minus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAA-ACTTTTGCTCCTGAAG 451250 || |||||| | | || || || || ||||| || || ||| | |||| | || || | Sbjct 289648 AGTAAAGCCTAAGGTACAGGTTAAATACAAAGGAGAGACCAAATAATTTTACCCC-GAGG 289590 Query 451251 AAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTC 451310 |||| || |||||||| ||| || ||||| || | ||||| || | || | Sbjct 289589 AAATCTCTTCTATGGTCCTTGTGAAGATGAAGGAGATTGCAGAGACTTACCTGGGACATA 289530 Query 451311 CAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAA 451370 || || |||| | ||||| ||||| || ||||| || ||| | ||| ||||||| | Sbjct 289529 ATGTGACGAATGCTATTATTACAGTTCCTGCGTATTTTAACGATTCCCAAAGGCAAGCCA 289470 Query 451371 CTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAG 451430 ||||| | | ||| || ||||| | ||||| || |||| || || || || |||| Sbjct 289469 CTAAAAACACTGGAGTAATCGCTGGACTGAATGTCCTCAGAATCATCAACGAGCCCACAG 289410 Query 451431 CAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAG 451490 | || || | || ||||| || | ||| |||| |||| || | | | Sbjct 289409 CTGCAGCCATTGCCTATGGCCTTGACAAAGGCAAAGCTTCAGAGCGCAACA---TCCTGA 289353 Query 451491 TATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTAT 451550 | ||||| | || ||||| || |||| || | || | ||||||||||| | | Sbjct 289352 TCTTTGACCTGGGAGGAGGCACCTTTGATGTGTCCATCCTGACCATTGAAGATGGCATTT 289293 Query 451551 TTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || | || ||||| || ||| || |||||||| || || || || Sbjct 289292 TTTAGGTGAAGGCCACAGCTGGAGACACTCATCTGGGTGGAGAGGA 289247 >seq7 Length=3438571 Score = 91.5 bits (100), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 450918 TTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAG 450977 |||| |||||||| || ||||||| || ||||||||||||| |||| ||||||| || | Sbjct 491199 TTGGTATTGATCTCGGGACCACCTACTCCTGTGTAGGTGTTTTCCAACATGGAAAAGTTG 491258 Query 450978 AAATTATAGCAAATGACCAAGGA 451000 |||| || || |||||||||||| Sbjct 491259 AAATCATTGCTAATGACCAAGGA 491281 >seq1186 Length=611208 Score = 89.7 bits (98), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || || || ||||| | Sbjct 449351 ATGCAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGC 449410 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||| ||||| ||||| |||||||| ||||||||||| || Sbjct 449411 GACACCATTGAGAACGTCAAAGCTAAAATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 449470 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGA 391208 || ||||| || ||| | || ||||| | ||||||||| Sbjct 449471 CAGCGTTTGATCTTCGCCGGCAAACAGTTGGAAGATGGA 449509 Score = 89.7 bits (98), Expect = 2e-12 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||||||||| || |||||||| || ||| || | Sbjct 453800 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 453859 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || || ||||| || ||||| ||||||||||| || Sbjct 453860 GACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 453919 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || ||||||||| | || | | || || || Sbjct 453920 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAAC 453979 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGG 391273 || | ||||| | || || ||| | || | | |||||||| Sbjct 453980 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCCGTCTGAGAGG 454023 Score = 84.2 bits (92), Expect = 9e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||||||||| || |||||||| || ||| || | Sbjct 449123 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGT 449182 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || || ||||| || ||||| ||||||||||| || Sbjct 449183 GACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 449242 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGA 391208 || ||| | || || | || || || || ||||||||| Sbjct 449243 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGA 449281 >seq1974 Length=112103 Score = 84.2 bits (92), Expect = 9e-11 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 ||||| || || || ||||| ||||||||||| ||||| ||||| ||||||| || || Sbjct 66428 GCAACCAAGGACGCCGGACAGATTGCTGGTTTGAATGTGCTTCGTGTTATTAACGAGCCG 66487 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 || || |||||| |||| || ||||| |||||| Sbjct 66488 ACGGCTGCTGCTTTAGCCTACGGACT-GGAAAA 66519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974926657399916