Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq987 114 1e-20 seq566 114 1e-20 seq362 114 1e-20 seq15 114 1e-20 >seq987 Length=405153 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || | || | || |||||||| |||||||| | Sbjct 241995 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 241936 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||| | || | ||||||||||||||| ||||| || ||||| ||||||||||| | Sbjct 241935 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 241876 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| || ||||| Sbjct 241875 CTACTAATCGCTCTCC 241860 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 19451 TAGATAA-ATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || |||| ||| || || ||||||||||| || ||||| | |||| ||| ||||| ||| Sbjct 239015 TAAATAATATCCACCTCCTCAACTGTCCAGAATGAAGCTTGAGCTTGTTTGTACATTTTC 238956 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATA 19569 || || ||| |||| || ||||| || || ||||||| ||| |||||| | |||| Sbjct 238955 CAGATGTCAGGATACTGAATAGGGAAAATGACAAATCGCTTTGGGTTTTCTCTGAGAAGG 238896 Query 19570 GGTTC 19574 ||||| Sbjct 238895 GGTTC 238891 >seq566 Length=1676785 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || | || | || |||||||| |||||||| | Sbjct 224425 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 224484 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | |||||| | || | ||||||||||||||| ||||| || ||||| ||||||||||| | Sbjct 224485 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 224544 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| || ||||| Sbjct 224545 CTACTAATCGCTCTCC 224560 >seq362 Length=1554118 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || | |||||||| |||||||| || | Sbjct 600552 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 600611 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| |||||| ||||||||||| || || |||||||| || ||||| || || ||||||| Sbjct 600612 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 600671 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| || || Sbjct 600672 CCACAACTCTCTCCCC 600687 >seq15 Length=4212223 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||||| || || || | |||||||| |||||||| || | Sbjct 2564874 CCTCATCTCTGCTGATAAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 2564815 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| |||||| ||||||||||| || ||||||||||| || ||||| || || ||||||| Sbjct 2564814 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2564755 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| || || Sbjct 2564754 CCACCACTCTCTCCCC 2564739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561889036538280