Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq588 100 5e-16 seq2831 91.5 3e-13 seq987 87.8 3e-12 seq566 87.8 3e-12 seq15 87.8 3e-12 seq362 84.2 4e-11 >seq588 Length=1544836 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| || || ||||| || || || || | ||| | ||| ||| |||| ||||| Sbjct 1276657 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTATACGGCTCGAT 1276716 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 ||| |||||||||||||||||||| ||| ||| ||||||||||| |||| |||||| Sbjct 1276717 TGACTCATTGTTGCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATGGGAGCCAGCAGCAG 1276776 Query 221242 ACTGTTGCGCAGTCC 221256 |||||| |||| ||| Sbjct 1276777 ACTGTTACGCACTCC 1276791 >seq2831 Length=39540 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| || || ||||| || || || || | ||| | ||| |||| | || ||||| Sbjct 25500 CACCTGAAACTCTCCAGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCGAT 25559 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 ||||||||| |||||||||||||| ||| ||| |||||||| || |||| |||||| Sbjct 25560 TGACTCGTTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCAGCAG 25619 Query 221242 ACTGTTGCGCAGTCC 221256 |||||| ||| ||| Sbjct 25620 ACTGTTAAGCACTCC 25634 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| ||||| |||| |||| || |||||||| || | ||| ||||| |||||||| Sbjct 27436 ACCTCATCCTTACTGGTGTACTCTACAATCTCTGTGCACAAGTTACTGCATTTGATGGTG 27495 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | || || |||||| ||| || |||||||||||||| |||| | Sbjct 27496 CCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTG 27555 Query 221852 CCAGTCTCCAGCTGAG 221867 || ||||| ||||| Sbjct 27556 CCGGTCTCTGTCTGAG 27571 >seq987 Length=405153 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||||| | ||||| ||||| || ||||| |||||||| ||| || || ||| Sbjct 241857 TTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTT 241916 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||| |||| | ||| | ||| || | |||||||| || || ||||| || Sbjct 241917 GCTGCCATCTACTGGTTGAAGAA-AAGAGGCCTGATGCCCGGACTCACCTACTCCAATGA 241975 Query 25989 GCTCATCAGCAGGGACGAGG 26008 ||||||||||| || |||| Sbjct 241976 ACTCATCAGCAGAGATGAGG 241995 >seq566 Length=1676785 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||||| | ||||| ||||| || ||||| |||||||| ||| || || ||| Sbjct 224563 TTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTT 224504 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||| |||| | ||| | ||| || | |||||||| || || ||||| || Sbjct 224503 GCTGCCATCTACTGGTTGAAGAA-AAGAGGCCTGATGCCCGGACTCACCTACTCCAATGA 224445 Query 25989 GCTCATCAGCAGGGACGAGG 26008 ||||||||||| || |||| Sbjct 224444 ACTCATCAGCAGAGATGAGG 224425 >seq15 Length=4212223 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| || |||||||||||||| || ||||| || || || ||||| | || |||| Sbjct 2564749 TGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCT 2564808 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||| ||| || || |||| |||||| || || ||| ||||| ||||| |||||||| Sbjct 2564809 GGCTAAAGAAG-AGAGGACTCATGCCTGGACTCACCTTCTCCAATGAGCTTATCAGCAGA 2564867 Query 26002 GACGAGG 26008 || |||| Sbjct 2564868 GATGAGG 2564874 >seq362 Length=1554118 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || || |||||||||||||| || ||||| || ||| || ||||| | || |||||| Sbjct 600675 GTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCTTCTATTTTCTGG 600616 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 || ||| || || |||| |||||| || || ||| ||||| || || |||||||| || Sbjct 600615 CTAAAGAAG-AGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATCAGCAGAGA 600557 Query 26004 CGAGG 26008 |||| Sbjct 600556 TGAGG 600552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928481656514880