Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq257 107 2e-18 seq4248 95.1 1e-14 >seq257 Length=2677400 Score = 107 bits (118), Expect = 2e-18 Identities = 222/330 (67%), Gaps = 3/330 (1%) Strand=Plus/Minus Query 160062 TCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATGG 160121 |||| ||||| || || | |||| || ||| ||| || || ||||| || |||||| Sbjct 2110844 TCCATACATTTGATTGCTACTTCGTCTACTTCTGGGTCAAACTTGTTTGCCAAAAGATGG 2110785 Query 160122 TGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATG 160181 || | ||||| ||||| | || ||| || | || | || || || | ||| || Sbjct 2110784 TGT---TGCTGTACAATCCATTTCAAGTCCCCAGCTCCATAGACACACACTGCCCGTCTG 2110728 Query 160182 TGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGC 160241 |||| || |||| || ||||| |||| || ||| || || ||||| |||| | Sbjct 2110727 TGCATCCCAGTGCATGGTGGGTAGGGAGCCCCATTCTTCAGTTCTCCTTCAAAGTAGCTC 2110668 Query 160242 CACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGA 160301 |||||||| | | || || | | |||||| || || || ||| | | ||| Sbjct 2110667 CACTTCACCAGACGAGCAATTGAATTCATGTCCGATTGTTCATACTTGATGTTTGGAGGA 2110608 Query 160302 ACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTG 160361 | || ||||| ||||| ||||||| || ||||||| ||| || || || ||| Sbjct 2110607 TTAGATCCTGGAACTGAAGGCATTCGCTGTAATGTAGCCCACATGTGCTCATCTGGACTG 2110548 Query 160362 TACGTGTCCTTAGACCATTCCATGAACTCT 160391 |||||||| || |||||||||||| ||| Sbjct 2110547 TACGTGTCTTTCTCCCATTCCATGAAATCT 2110518 Score = 86.0 bits (94), Expect = 7e-12 Identities = 203/306 (66%), Gaps = 3/306 (1%) Strand=Plus/Minus Query 160086 TCAACGTCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGC 160145 || || ||| ||| || || ||||| || |||||||| | ||||| ||||| | | Sbjct 2132300 TCTACTTCTGGGTCAAACTTGTTTGCCAAAAGATGGTGT---TGCTGTACAATCCATTTC 2132244 Query 160146 ACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTAC 160205 | ||| || | || | || || || | ||| |||||| || |||| || ||||| Sbjct 2132243 AAGTCCCCAGCTCCATAGACACACACTGCCCGTCTGTGCATCCCAGTGCATGGTGGGTAG 2132184 Query 160206 AGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCC 160265 |||| || || | || ||||| |||| ||||||||| | | || || | Sbjct 2132183 GGAGCCCCACTCTTTAGATCTCCTTCAAAGTAGCTCCACTTCACCAGACGAGCAATTGAA 2132124 Query 160266 TGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATA 160325 | |||||| || || || ||| | | ||| | || ||||| ||||| Sbjct 2132123 TTCATGTCCGATTGTTCATACTTGATGTTTGGAGGATTAGATCCTGGAACTGAAGGCATC 2132064 Query 160326 CGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATG 160385 | ||||| || ||||||| ||| || || || ||||||||||| || |||||||||| Sbjct 2132063 CTCTGTAATGTAGCCCACATGTGCTCATCTGGACTGTACGTGTCTTTCTCCCATTCCATG 2132004 Query 160386 AACTCT 160391 || ||| Sbjct 2132003 AAATCT 2131998 >seq4248 Length=15230 Score = 95.1 bits (104), Expect = 1e-14 Identities = 205/306 (67%), Gaps = 3/306 (1%) Strand=Plus/Plus Query 160086 TCAACGTCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGC 160145 || || ||| ||| || || ||||| || |||||||| | ||||| ||||| | | Sbjct 5814 TCTACTTCTGGGTCAAACTTGTTTGCCAAAAGATGGTGT---TGCTGTACAATCCATTTC 5870 Query 160146 ACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTAC 160205 | ||| || | || | || || || | ||| |||||| || |||| || ||||| Sbjct 5871 AAGTCCCCAGCTCCATAGACACACACTGCCCGTCTGTGCATCCCAGTGCATGGTGGGTAG 5930 Query 160206 AGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCC 160265 |||| || || | || ||||| | ||| |||||||||| | | || || || Sbjct 5931 GGAGCCCCACTCTTTAGATCTCCTTCATGGTAGCGCCACTTCACCAGACGAGCAATTGCA 5990 Query 160266 TGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATA 160325 | |||||| || || || ||| | | ||| | || ||||| ||||| Sbjct 5991 TTCATGTCCGATTGTTCATACTTGATGTTTGGAGGATTAGATCCTGGAACTGAAGGCATC 6050 Query 160326 CGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATG 160385 | ||||| || ||||||| ||| || || || ||||||||||| || |||||||||| Sbjct 6051 CTCTGTAATGTAGCCCACATGTGCTCATCTGGACTGTACGTGTCTTTCTCCCATTCCATG 6110 Query 160386 AACTCT 160391 || ||| Sbjct 6111 AAATCT 6116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576993528938520