Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq110 111 3e-19 seq1186 109 1e-18 seq453 98.7 2e-15 seq475 93.3 8e-14 >seq110 Length=2794823 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||||| || || || ||||| | || | |||||| || || Sbjct 1817612 ATTTGCATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTG 1817671 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | ||| || || ||||| ||||| || || || | ||| || Sbjct 1817672 TAGTCGGAGAGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGG 1817731 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||| || ||||| ||||| | ||| | || ||| || ||| Sbjct 1817732 TCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTG 1817791 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 | |||||| || || || || || || || || ||||| || || || || ||||| Sbjct 1817792 GGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 1817847 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||||| || || || ||||| | || | |||||| || || Sbjct 1819017 ATTTGCATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTG 1819076 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | ||| || || ||||| ||||| || || || | ||| || Sbjct 1819077 TAGTCGGAGAGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGG 1819136 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 |||||||| || ||||| || ||||| ||||| | ||| | || ||| || ||| Sbjct 1819137 TCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTG 1819196 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 | |||||| || || || || || || || || ||||| || || || || ||||| Sbjct 1819197 GGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 1819252 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || || ||||| | || | |||||| || || |||||| Sbjct 1819479 ATACCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG 1819538 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | | ||| || |||||| Sbjct 1819539 GACAGTGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGA 1819598 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| | ||| | ||| ||| || ||| | |||| Sbjct 1819599 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCA 1819658 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcatttt 193363 || || || || || || || || || ||||| || ||||| || ||||| || Sbjct 1819659 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTT 1819711 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || || ||||| | || | |||||| || || |||||| Sbjct 1819251 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG 1819310 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || || ||||| ||||| || || || | ||| || |||||| Sbjct 1819311 GAGAGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGA 1819370 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| | ||| | | ||| || ||| | |||| Sbjct 1819371 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTCCTCAATGGTGTCGCTGGGCTCA 1819430 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 || || || || || || || || || ||||| || || || || ||||| Sbjct 1819431 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 1819480 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || ||||| || | || | ||| || || || || || Sbjct 1817390 ATACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCA 1817449 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||| | ||| || | || || || || || || || | ||| ||||||||| Sbjct 1817450 GACAGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGA 1817509 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| || | || ||| || || | |||| Sbjct 1817510 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCA 1817569 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 ||||| | ||| || ||||| || || ||||| || || || |||||||| Sbjct 1817570 ACTTCCAAAGTGATGGTTTTTCCAGTCAGCGTCTTGACGAAGATTTGCAT 1817619 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || ||||| || | || | ||| || || || || || Sbjct 1818795 ATACCACCTCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCA 1818854 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||| | ||| || | || || || || || || || | ||| ||||||||| Sbjct 1818855 GACAGCGTGCGTCCATCTTCAAGCTGCTTGCCAGCGAAGATCAACCGCTGCTGATCAGGA 1818914 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| || | || ||| || || | |||| Sbjct 1818915 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCA 1818974 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 ||||| | ||| || ||||| || || ||||| || || || |||||||| Sbjct 1818975 ACTTCCAAAGTGATGGTTTTTCCAGTCAGCGTCTTGACGAAGATTTGCAT 1819024 >seq1186 Length=611208 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || || ||||| | || | |||||| || || |||||| Sbjct 449580 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG 449521 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || || ||||| ||||| || || || | ||| || |||||| Sbjct 449520 GAGAGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGA 449461 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| | ||| | || ||| || ||| | |||| Sbjct 449460 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCA 449401 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGtttttacaaatatttgcat 193360 || || || || || || || || || ||||| || || || || ||||| Sbjct 449400 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 449351 >seq453 Length=1395482 Score = 98.7 bits (108), Expect = 2e-15 Identities = 178/257 (69%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 |||||||||||| || | |||||| || || ||||| || | || | | ||| || Sbjct 606290 TACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCTTC 606349 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 | ||||| || ||||| || | ||||| |||||||| || || |||||||| || || Sbjct 606350 CAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTGTCCTG 606409 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 || || | |||| || ||| || ||| | ||| || || || || || || || Sbjct 606410 GATCTTTGCCTTTACGTTCTCAATGGTGTCGCTTGGCTCGACCTCAAGGGTGATGGTCTT 606469 Query 193331 ACCTGTTAGCGtttttacaaatatttgcattttattagtaaaataattattttaaataat 193390 || || || ||||| ||||| || |||| | ||| | |||| || | | || || || Sbjct 606470 GCCAGTGAGGGTTTTGACAAAGATCTGCA-TCTATAAACAAAACAAAAAATATATAT-AT 606527 Query 193391 atatactttatatttta 193407 ||| ||||||| ||| Sbjct 606528 ATA---TTTATATATTA 606541 >seq475 Length=1111492 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 ||||||||||| || | |||||| || || ||||| || || || | | ||| || Sbjct 249646 ACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGACAATGTGCGACCATCTTCC 249587 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||||| |||||||| || || ||||| || ||||| || || |||||||| || || Sbjct 249586 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGG 249527 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || || | || | || ||| || ||| | |||||| || || || || || || Sbjct 249526 ATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTG 249467 Query 193332 CCTGTTAGCGtttttacaaatatttgcat 193360 ||||| | || || || || || ||||| Sbjct 249466 CCTGTCAAGGTCTTGACGAAGATCTGCAT 249438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899302668866640