Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1186 122 2e-22 seq110 118 2e-21 seq453 107 4e-18 >seq1186 Length=611208 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | || | ||| | ||| || ||| || || ||| Sbjct 454029 ATACCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 453970 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| |||| || |||||||||||||| | | ||| || ||||| Sbjct 453969 GAGAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGA 453910 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || ||||| ||| | || | ||| Sbjct 453909 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCC 453850 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||||||||| || || || | ||| |||||||| Sbjct 453849 ACCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 453800 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 192339 AGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 ||| | |||||| ||| || || ||||| | || ||| |||| |||| || ||||| Sbjct 449320 AGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTACC 449261 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 192458 ||||||||| | | ||| || ||||| || || |||||||| ||||| || || || Sbjct 449260 AGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTT 449201 Query 192459 TACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518 ||||| ||| | || | ||| || || ||||| |||||||||||||| || || Sbjct 449200 GACATTCTCTATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTACCAGTCAAGGT 449141 Query 192519 TTTAATAAATATCTGCAT 192536 || | ||| |||||||| Sbjct 449140 CTTCACAAAGATCTGCAT 449123 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | |||||| ||| || || || Sbjct 449580 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG 449521 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| ||||| ||||| || || ||||| || | ||| || ||||| Sbjct 449520 GAGAGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGA 449461 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| || || || | || | || Sbjct 449460 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCA 449401 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || || | || |||||||| Sbjct 449400 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 449351 Score = 84.2 bits (92), Expect = 4e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || ||||| | || ||| |||| |||| || || ||||||||||| | | Sbjct 448849 GATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACG 448790 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| |||||||| || || ||||| || ||||| |||||| ||| || || || | Sbjct 448789 CTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGT 448730 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || | || || || || || ||||| || ||||| | || || | ||| ||||| Sbjct 448729 GTCGCTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTG 448670 Query 192534 CATTTT 192539 ||| || Sbjct 448669 CATCTT 448664 >seq110 Length=2794823 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | |||||| ||| || || ||| Sbjct 1818302 ATACCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCA 1818361 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| |||| |||| | |||||||||||||| | | ||| || ||||| Sbjct 1818362 GGGAGGGTGCGTCCATCTTCCAGCGGCTTACCAGCAAAGATCAGACGCTGCTGCTCAGGA 1818421 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || ||||| ||| | || | ||| Sbjct 1818422 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCC 1818481 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||||||||| || || || | ||| |||||||| Sbjct 1818482 ACCTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1818531 Score = 109 bits (120), Expect = 1e-18 Identities = 173/246 (70%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | |||||| ||| || || || Sbjct 1819479 ATACCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG 1819538 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| |||| || || ||||||||||| | | ||| || ||||| Sbjct 1819539 GACAGTGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGA 1819598 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| ||||| || | || | || Sbjct 1819599 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCA 1819658 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT-TTTA--TTA 192543 || || || || ||||| || ||||| | || || | ||| |||||||| |||| || Sbjct 1819659 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCTA 1819718 Query 192544 GAAAAA 192549 |||||| Sbjct 1819719 GAAAAA 1819724 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | |||||| ||| || || || Sbjct 1817618 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG 1817677 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| ||||| ||||| || || ||||| || | ||| || ||||| Sbjct 1817678 GAGAGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGA 1817737 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| || || || | || | || Sbjct 1817738 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCA 1817797 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || || | || |||||||| Sbjct 1817798 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 1817847 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | |||||| ||| || || || Sbjct 1819023 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG 1819082 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| ||||| ||||| || || ||||| || | ||| || ||||| Sbjct 1819083 GAGAGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGA 1819142 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| || || || | || | || Sbjct 1819143 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTCTCAATGGTGTCGCTGGGCTCA 1819202 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || || | || |||||||| Sbjct 1819203 ACCTCGAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 1819252 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| | || | ||| | || | |||||| ||| || || || Sbjct 1819251 ATACCACCTCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCG 1819310 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| ||| |||| ||||| ||||| || || ||||| || | ||| || ||||| Sbjct 1819311 GAGAGTGTGCGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGGTCAGGA 1819370 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTAC 192461 || || ||||| || ||||| |||||| ||| || Sbjct 1819371 GGAATGCCTTCCTTGTCTTGGATTTTAGCTTTGAC 1819405 >seq453 Length=1395482 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || || ||||| ||||| | ||| || || | |||||| ||| || || ||||| Sbjct 606273 CCTCCCCTGAGACGCAATACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 606332 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| || |||| |||| ||||| ||||||||||| | ||||| |||||||| || Sbjct 606333 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 606392 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| || || || || ||||| || || | || | || || Sbjct 606393 ATGCCTTCTTTGTCCTGGATCTTTGCCTTTACGTTCTCAATGGTGTCGCTTGGCTCGACC 606452 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || ||||| | ||||| | ||| |||||||| Sbjct 606453 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 606499 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || | ||| || || | |||||| ||| || || ||| Sbjct 606042 ATGCCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA 606101 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| ||||| ||||||||||| | ||||| |||||||| Sbjct 606102 GACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGG 606161 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || || |||||||| || || || || Sbjct 606162 GGAATGCCTTCTTTGTCCTGGATCTT 606187 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || || ||||| | || | ||| || || | |||||| ||| || || ||||| Sbjct 605816 ACCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 605875 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||| || |||| |||| ||||| ||||||||||| | ||||| || ||||| || Sbjct 605876 CAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 605935 Query 192429 TATTCCTTCTTTATCTTGTATTTT 192452 || |||||||| || || || || Sbjct 605936 AATGCCTTCTTTGTCCTGGATCTT 605959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984085482868950