Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq453 98.7 8e-16 seq475 89.7 4e-13 >seq453 Length=1395482 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| | || ||||| ||||| ||| | || ||||| | Sbjct 606499 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGC 606440 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | ||||| ||||| |||||||||||| | ||| ||||| Sbjct 606439 GACACCATTGAGAACGTAAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGATCAG 606380 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || ||||||||||| |||| | ||| || | || |||||| Sbjct 606379 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAAC 606320 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || ||||| || || ||||| |||| || Sbjct 606319 ATCCAGAAAGAGTCCACCTTGCATCTGGTATT 606288 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||| | || ||||| || || ||| | || ||||| Sbjct 606043 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACAATCACCCTTGAGGTTGAGCCCAGT 605984 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | ||||| ||||| |||||||||||| | ||| || || Sbjct 605983 GACACCATTGAGAACGTAAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 605924 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || ||||||||||| |||| | ||| || | || |||||| Sbjct 605923 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAAC 605864 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || ||||| || || ||||| ||||| Sbjct 605863 ATCCAGAAAGAGTCCACCTTGCATCTGGTG 605834 >seq475 Length=1111492 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || ||||| ||||| ||| | || ||||| | Sbjct 249438 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 249497 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| |||||||||||| | ||| || || Sbjct 249498 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 249557 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || ||||||||||| |||| | ||| || | || |||||| Sbjct 249558 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGTCGCACATTGTCTGACTACAAC 249617 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || |||||||| || || ||||| ||||||| Sbjct 249618 ATCCAAAAAGAGTCCACCTTGCATCTGGTGTT 249649 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| | || || || ||||| ||| | || ||||| | Sbjct 248070 ATGCAGATCTTTGTCAAAACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC 248129 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| |||||||||||| | ||| || || Sbjct 248130 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 248189 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || ||||||||||| |||| | | ||| || | || |||||| Sbjct 248190 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 248249 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || ||||| || || ||||| Sbjct 248250 ATCCAGAAAGAGTCCACCTTGCA 248272 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || ||||| ||||| ||| | || ||||| | Sbjct 248298 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 248357 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| |||||||||||| | ||| || || Sbjct 248358 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 248417 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || ||||||||||| |||| | | ||| || | || |||||| Sbjct 248418 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 248477 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || ||||| || || ||||| Sbjct 248478 ATCCAGAAAGAGTCCACCTTGCA 248500 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || ||||| ||||| ||| | || ||||| | Sbjct 248982 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 249041 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| |||||||||||| | ||| || || Sbjct 249042 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 249101 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || ||||||||||| |||| | | ||| || | || |||||| Sbjct 249102 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 249161 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || ||||| || || ||||| Sbjct 249162 ATCCAGAAAGAGTCCACCTTGCA 249184 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || || ||||| ||||| ||| | || ||||| | Sbjct 249210 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 249269 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || ||||| |||||||||||| | ||| || || Sbjct 249270 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 249329 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || ||||||||||| |||| | | ||| || | || |||||| Sbjct 249330 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 249389 Query 110453 ATTCAAAAAGAATCTACGTTGCA 110475 || || ||||| || || ||||| Sbjct 249390 ATCCAGAAAGAGTCCACCTTGCA 249412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412684229555561