Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq453 107 2e-18 seq475 96.9 3e-15 >seq453 Length=1395482 Score = 107 bits (118), Expect = 2e-18 Identities = 157/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 ||||| | ||||| || ||||||||||| | || ||||| ||||| ||| | || | Sbjct 606507 GTTTATAGATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCG 606448 Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 || | |||| || | | | ||||| |||||| || ||||||||| | ||| Sbjct 606447 AGCCAAGCGACACCATTGAGAACGTAAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCC 606388 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727 ||||||||||| || || | ||| || ||||||||||| || | ||| || | | Sbjct 606387 CTGATCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTG 606328 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||||||| || || ||||| || ||||| |||| ||| Sbjct 606327 ACTACAACATCCAGAAAGAGTCCACCTTGCATCTGGTATTG 606287 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| ||| | || ||||| || || ||| | || ||| | | Sbjct 606043 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACAATCACCCTTGAGGTTGAGCCCAGT 605984 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | ||||| |||||| || ||||||||| | ||| || ||| Sbjct 605983 GACACCATTGAGAACGTAAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 605924 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || ||||||||||| || | ||| || | ||||||||| Sbjct 605923 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAAC 605864 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || || ||||| || ||||| ||||| || Sbjct 605863 ATCCAGAAAGAGTCCACCTTGCATCTGGTGCTG 605831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 107558 GCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGA 107617 ||||| || ||||| ||| | || ||||| || || ||| | || ||| | | || Sbjct 606269 GCAAAACTTCGTCAAGACTCTCACTGGCAAGACAATCACCCTTGAGGTTGAGCCCAGTGA 606210 Query 107618 TACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCA 107677 || | | | || || |||||| || ||||||||| | ||| |||||||| Sbjct 606209 CACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGATCAGCA 606150 Query 107678 GAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACAT 107737 ||| || || | ||| || ||||||||||| || | ||| || | ||||||||||| Sbjct 606149 GAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAACAT 606090 Query 107738 TCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || ||||| || ||||| ||||| || Sbjct 606089 CCAGAAAGAGTCCACCTTGCATCTGGTGCTG 606059 >seq475 Length=1111492 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || |||||||| ||||| ||| | || ||| | || Sbjct 249438 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 249497 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| || ||||||||| | ||| || ||| Sbjct 249498 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 249557 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || ||||||||||| || | ||| || | ||||||||| Sbjct 249558 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGTCGCACATTGTCTGACTACAAC 249617 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || ||||| ||||| || ||||| |||||||| Sbjct 249618 ATCCAAAAAGAGTCCACCTTGCATCTGGTGTTG 249650 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || |||||||| ||||| ||| | || ||| | || Sbjct 248982 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 249041 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| || ||||||||| | ||| || ||| Sbjct 249042 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 249101 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || ||||||||||| || | | ||| || | ||||||||| Sbjct 249102 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 249161 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 || || || ||||| || ||||| Sbjct 249162 ATCCAGAAAGAGTCCACCTTGCA 249184 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || |||||||| ||||| ||| | || ||| | || Sbjct 249210 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 249269 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| || ||||||||| | ||| || ||| Sbjct 249270 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 249329 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || ||||||||||| || | | ||| || | ||||||||| Sbjct 249330 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 249389 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 || || || ||||| || ||||| Sbjct 249390 ATCCAGAAAGAGTCCACCTTGCA 249412 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 107557 TGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCG 107616 |||| || || ||||| || || |||||||| ||||| ||| | || ||| | ||| Sbjct 248755 TGCAGATCTTCGTCAAGACCTTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCAAGCG 248814 Query 107617 ATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGC 107676 | || | | | || || ||||| || ||||||||| | ||| || |||| Sbjct 248815 ACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 248874 Query 107677 AGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACA 107736 |||| | || | ||| || ||||||||||| || | | ||| || | |||||||||| Sbjct 248875 AGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAACA 248934 Query 107737 TTCAAAAGGAGTCTACGTTGCA 107758 | || || ||||| || ||||| Sbjct 248935 TCCAGAAAGAGTCCACCTTGCA 248956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 107549 GTTTAAA-ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGG 107607 ||||| | ||||| || ||||||||||| | || || || ||||| ||| | || | Sbjct 248062 GTTTATAGATGCAGATCTTTGTCAAAACCCTCACTGGTAAGACCATCACCCTTGAGGTTG 248121 Query 107608 AGGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCG 107667 || | |||| || | | | || || ||||| || ||||||||| | ||| Sbjct 248122 AGCCAAGCGACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCC 248181 Query 107668 TGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGG 107727 || |||||||| | || | ||| || ||||||||||| || | | ||| || | | Sbjct 248182 CTGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTG 248241 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCA 107758 |||||||||| || || ||||| || ||||| Sbjct 248242 ACTACAACATCCAGAAAGAGTCCACCTTGCA 248272 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || || ||||| ||||| ||| | || ||| | || Sbjct 248298 ATGCAGATCTTCGTCAAGACCTTGACGGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 248357 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| || ||||||||| | ||| || ||| Sbjct 248358 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 248417 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || ||||||||||| || | | ||| || | ||||||||| Sbjct 248418 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 248477 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 || || || ||||| || ||||| Sbjct 248478 ATCCAGAAAGAGTCCACCTTGCA 248500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398724752775853