Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1186 140 2e-28 seq110 134 1e-26 seq453 131 1e-25 >seq1186 Length=611208 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | || ||||||| || || ||||| ||||| || ||||| || || | Sbjct 449349 CCTCCCCTGAGGCGGAGCACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAG 449290 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || |||||| | |||| | ||||| || || ||| Sbjct 449289 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 449230 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || |||||| | |||| |||||| |||| || Sbjct 449229 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCCACC 449170 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || ||||| ||||| ||||| || ||||| |||||||| Sbjct 449169 TCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 449123 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| ||||||| || || ||||| || || || ||||| || || | Sbjct 454026 CCACCTCTCAGACGGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAG 453967 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || |||||| | |||| | ||||| || || ||| Sbjct 453966 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 453907 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || |||||| | |||| |||||| |||| || Sbjct 453906 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCCACC 453847 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || ||||| ||||| ||||| || ||||| |||||||| Sbjct 453846 TCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 453800 >seq110 Length=2794823 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||| || | ||| || ||||| ||||| || ||||| || || | Sbjct 1818305 CCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGGG 1818364 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || | || |||||| | |||| | ||||| || || ||| Sbjct 1818365 AGGGTGCGTCCATCTTCCAGCGGCTTACCAGCAAAGATCAGACGCTGCTGCTCAGGAGGA 1818424 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | || |||||| | |||| |||||| |||| || Sbjct 1818425 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCCACC 1818484 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || ||||| ||||| ||||| || ||||| |||||||| Sbjct 1818485 TCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1818531 >seq453 Length=1395482 Score = 131 bits (144), Expect = 1e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||| |||| ||| | ||||| ||||| || ||||| || || | Sbjct 606273 CCTCCCCTGAGACGCAATACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 606332 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||||||| | |||| || |||||||| || ||| Sbjct 606333 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 606392 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | ||| || || | || | ||||| | || || Sbjct 606393 ATGCCTTCTTTGTCCTGGATCTTTGCCTTTACGTTCTCAATGGTGTCGCTTGGCTCGACC 606452 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAAC 29794 ||||| || || || |||||||| | |||||| ||||| |||||||| | |||| Sbjct 606453 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATCTATAAAC 606507 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||||||||| ||| | ||||| ||||| || ||||| || || | Sbjct 605817 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 605876 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||||||| | |||| || ||||| || || ||| Sbjct 605877 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 605936 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | ||| || || | || | |||||| | || || Sbjct 605937 ATGCCTTCTTTGTCCTGGATCTTTGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACC 605996 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| | || || || || |||||||| Sbjct 605997 TCAAGGGTGATTGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 606043 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||||||||| ||| | ||||| ||||| || ||||| || || | Sbjct 606045 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 606104 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||||||| | |||| || |||||||| || ||| Sbjct 606105 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 606164 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | ||| ||||| | || | |||||| | || || Sbjct 606165 ATGCCTTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 606224 Query 29740 TCAAGAGTTATAGTTTTGCCAGT 29762 ||||| || || || |||||||| Sbjct 606225 TCAAGGGTGATTGTCTTGCCAGT 606247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385072358895057