Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq453 105 7e-18 seq475 95.1 1e-14 seq1186 93.3 4e-14 seq110 93.3 4e-14 >seq453 Length=1395482 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| | | |||||| || | ||| | || || ||||| || |||||||| || Sbjct 606272 GCCTCCCCTGAGACGCAATACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 606331 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| ||||| || ||||| |||||| ||||||| | |||||||| || || Sbjct 606332 CAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 606391 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| || ||| |||| | || | ||||| | || || || Sbjct 606392 AATGCCTTCTTTGTCCTGGATCTTTGCCTTTACGTTCTCAATGGTGTCGCTTGGCTCGAC 606451 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||| || | ||||| || || || ||||| Sbjct 606452 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 606499 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| | | ||||| || | ||| | || || ||||| || |||||||| || | Sbjct 605817 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 605876 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| || ||||| |||||| ||||||| | ||||| || || || Sbjct 605877 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 605936 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| || ||| |||| | || | ||||| |||| || || Sbjct 605937 ATGCCTTCTTTGTCCTGGATCTTTGCCTTTACGTTCTCAATGGTGTCACTGGGCTCAACC 605996 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||| || | || || ||||| || ||||| Sbjct 605997 TCAAGGGTGATTGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 606043 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| | | ||||| || | ||| | || || ||||| || |||||||| || Sbjct 606044 GCCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 606103 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| ||||| || ||||| |||||| ||||||| | |||||||| || || Sbjct 606104 CAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 606163 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| || ||| || | | || | ||||| |||| || || Sbjct 606164 AATGCCTTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAAC 606223 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGC 137409 |||| || | |||||||| || | || || ||||| ||||| Sbjct 606224 CTCAAGGGTGATTGTCTTGCCAGTGAGAGTCTTGACGAAGTTTTGC 606269 >seq475 Length=1111492 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| | | |||||| || | ||| | || || |||||||| |||||||| || | Sbjct 249664 CCTCCCCTGAGACGCAACACCAGATGCAAGGTGGACTCTTTTTGGATGTTGTAGTCAGAC 249605 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| || ||||| || ||| |||||| | ||||| || || || Sbjct 249604 AATGTGCGACCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGGA 249545 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| || || || | | || | ||||| | || || || Sbjct 249544 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACC 249485 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||| ||||| || || ||||| || ||||| Sbjct 249484 TCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 249438 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| | | ||||| || | ||| | || || ||||| || |||||||| || Sbjct 248525 GCCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 248466 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| ||||| || ||||| || ||| |||||| | ||||| || || || Sbjct 248465 CAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 248406 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| || || || | | || | ||||| | || || || Sbjct 248405 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAAC 248346 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||| ||||| || || ||||| || ||||| Sbjct 248345 CTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAGATCTGCAT 248298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| | | ||||| || | ||| | || || ||||| || |||||||| || Sbjct 249209 GCCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 249150 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| ||||| || ||||| || ||| |||||| | ||||| || || || Sbjct 249149 CAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 249090 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| || || || | | || | ||||| | || || || Sbjct 249089 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAAC 249030 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||| ||||| || || ||||| || ||||| Sbjct 249029 CTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 248982 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| | | ||||| || | ||| | || || ||||| || |||||||| || Sbjct 249437 GCCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 249378 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| ||||| || ||||| || ||| |||||| | ||||| || || || Sbjct 249377 CAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 249318 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| || || || | | || | ||||| | || || || Sbjct 249317 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAAC 249258 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||| ||||| || || ||||| || ||||| Sbjct 249257 CTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 249210 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| | | ||||| || | ||| | || || ||||| || |||||||| || Sbjct 248981 GCCTCCCCTGAGACGCAGCACAAGATGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGA 248922 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||||| ||||| || ||||| || ||| |||||| | ||||| || || || Sbjct 248921 CAATGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCAGGGGG 248862 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| || || || | | || | ||||| | || || || Sbjct 248861 AATGCCTTCTTTGTCCTGGATCTTAGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAAC 248802 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCA 137410 |||| || | |||||||| ||||| || || ||||| || |||| Sbjct 248801 CTCAAGGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCA 248755 >seq1186 Length=611208 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || || ||||| || |||||||| || | |||| || | ||||| || || ||||| Sbjct 449319 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCA-TCTTCCAGCTGCTTACC 449261 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 |||| |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 449260 AGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTT 449201 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||||| | ||||| || |||| ||| | || || || ||||| || Sbjct 449200 GACATTCTCTATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTACCAGTCAAGGT 449141 Query 137394 TTTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 449140 CTTCACAAAGATCTGCAT 449123 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || || || || || |||||||| || | |||| || | ||||| || || ||||| Sbjct 453996 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCA-TCTTCCAGCTGCTTACC 453938 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 |||| |||||||||| ||||| || ||||| |||||||||||||| || || || Sbjct 453937 AGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTT 453878 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||||| | ||||| || |||| ||| | || || || ||||| || Sbjct 453877 GACATTCTCTATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTACCAGTCAAGGT 453818 Query 137394 TTTTACGAATATTTGCAT 137411 || || || || ||||| Sbjct 453817 CTTCACAAAGATCTGCAT 453800 >seq110 Length=2794823 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| | ||||| || | ||| | || || ||||| || |||||||| || Sbjct 1818305 CCACCTCTCAGACGCAGGACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGGG 1818364 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| || | ||||| || | ||||||||| |||||||||| ||||| || ||||| Sbjct 1818365 AGGGTGCGTCCA-TCTTCCAGCGGCTTACCAGCAAAGATCAGACGCTGCTGCTCAGGAGG 1818423 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| || || || | | || | ||||| | ||||| || Sbjct 1818424 AATGCCTTCTTTGTCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCCAC 1818483 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | || || || ||||| || || || || || ||||| Sbjct 1818484 CTCAAGAGTGATGGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1818531 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || || || || || ||||||||||| || |||| || | ||||| || || || || Sbjct 1817423 GTGGACTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCA-TCTTCAAGCTGCTTGCC 1817481 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 ||| |||||| || |||||||| ||||| |||||||| ||||| || || || Sbjct 1817482 AGCGAAGATCAACCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 1817541 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||||| |||| || ||||| | ||| | || || || |||| || Sbjct 1817542 CACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTTTTTCCAGTCAGCGT 1817601 Query 137394 TTTTACGAATATTTGCATA 137412 || ||||| ||||||||| Sbjct 1817602 CTTGACGAAGATTTGCATA 1817620 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 137273 || || || || || ||||||||||| || |||| || | ||||| || || || || Sbjct 1818828 GTGGACTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCA-TCTTCAAGCTGCTTGCC 1818886 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 ||| |||||| || |||||||| ||||| |||||||| ||||| || || || Sbjct 1818887 AGCGAAGATCAACCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 1818946 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||||| |||| || ||||| | ||| | || || || |||| || Sbjct 1818947 CACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTTTTTCCAGTCAGCGT 1819006 Query 137394 TTTTACGAATATTTGCATA 137412 || ||||| ||||||||| Sbjct 1819007 CTTGACGAAGATTTGCATA 1819025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488352997616400