Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq54 141 1e-28 seq972 132 6e-26 >seq54 Length=6874286 Score = 141 bits (156), Expect = 1e-28 Identities = 243/350 (69%), Gaps = 12/350 (3%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| || | || |||| | |||| | ||||| |||||||| | |||| | ||| | Sbjct 658040 GCCAGCTCCTTCGGAGACGGGAAGTCATCAACGTGGATGAAAGCATTTCCCTGCACGAAG 658099 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || | || ||||| || | || |||||| || | |||||| | ||||| ||| | Sbjct 658100 TTCTGATAGTTCTCCCTTGGTGGTCCGAGCACAACGGGTACGG----TGCCAACAGAAAG 658155 Query 177066 CGG----TAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATA 177121 ||| || | ||| || || |||||||| |||| | |||||||| || || | ||| Sbjct 658156 CGGGTTGTACAATTTCTCAGTGATATAGTCTTTGTGAATCGAGTTCTCGAATGCCAAATA 658215 Query 177122 GAATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACT 177179 |||||||||| ||| ||| |||| |||| | |||| || || || || | | Sbjct 658216 GAATTTACAGCTTGCGATTGTA--GGGAAATAGTCCTGGTCGGAAATGTACTCACCAAAT 658273 Query 177180 ACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTC 177239 | | |||||| |||| | || ||||| || ||| || ||||||| || ||| Sbjct 658274 GCTTGTCCGTATGCATGAACCTCGATGTGCTTGTAGAGTTCATTGTAGTATTTCACTCTG 658333 Query 177240 ACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 ||||| || ||||||||||||||||| ||| |||| | |||| |||| Sbjct 658334 ACGTGATCTGGGTTCCAATTGCTGACGATCCAACAAATCAGCTTGTTCTT 658383 >seq972 Length=986599 Score = 132 bits (146), Expect = 6e-26 Identities = 238/346 (69%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| || | || |||| | |||| | ||||| || ||||| | |||| | ||| | Sbjct 250294 GCCAGCTCCTTTGGAGACGGGAAGTCATCGACGTGGATAAAAGCATTTCCCTGCACGAAG 250235 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || | || ||||| || | || |||||| || | |||||| | || | ||| | Sbjct 250234 TTCTGATAGTTCTCCCTTGGTGGTCCGAGCACCACGGGTACAGTGCCGACGGAAAGCGGG 250175 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| | ||| || || |||||||| |||| | ||||||||||| || | ||| ||| Sbjct 250174 TTGTACAATTTCTCAGTGATATAGTCTTTGTGAATTGAGTTCTCAAATGCCAAATAAAAT 250115 Query 177126 TTACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 |||||| | || |||| | || |||| | |||| || || || || | | | | Sbjct 250114 TTACAGCTTGCAATTGTAGGGAAAT--AGTCCTGGTCGGAAATGTACTCACCAAATGCTT 250057 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGT 177243 |||||| |||| | || ||||| || || || ||||||| || ||| |||| Sbjct 250056 GTCCGTATGCATGAACCTCGATGTGCTTGTATAGTTCATTGTAGTATTTCACTCTGACGT 249997 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 |||| ||||||||||||||||| ||| |||| | |||| |||| Sbjct 249996 GGTCTGGGTTCCAATTGCTGACGATCCAACAAATCAGCTTGTTCTT 249951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578205854779200