Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq362 96.9 8e-15 seq15 87.8 4e-12 >seq362 Length=1554118 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 ||| |||| ||||||||| ||| ||||| || |||||||| || |||| | |||| Sbjct 600681 AGAGTTGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCCGGGTCTTTTGCTTCTATT 600622 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 || ||||| |||||| | ||| | |||||||||||| | || |||||| || | ||| Sbjct 600621 TTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATCAGC 600562 Query 131978 AGAGATGA 131985 |||||||| Sbjct 600561 AGAGATGA 600554 >seq15 Length=4212223 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 ||| | || ||||||||| ||| ||||| || |||||||| || |||| | |||| Sbjct 2564745 AGAGTGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATT 2564804 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 || ||||| |||||| | ||| | |||||||||||| | || |||||| | | ||| Sbjct 2564805 TTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAGCTTATCAGC 2564864 Query 131978 AGAGATGA 131985 |||||||| Sbjct 2564865 AGAGATGA 2564872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186337200718197