Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1186 102 2e-16 seq110 100 7e-16 seq475 89.7 1e-12 seq453 87.8 4e-12 >seq1186 Length=611208 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || ||||| |||||| | || |||||| |||| Sbjct 449126 CAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGTGAC 449185 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| |||||||| ||| || ||| || Sbjct 449186 ACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAGCAG 449245 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| ||||||||||| | || | | || |||||| || Sbjct 449246 CGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAACATC 449305 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| ||||| ||||| || Sbjct 449306 CAGAAAGAGTCCACTCTCCACCTGGT 449331 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || ||||| |||||| | || |||||| |||| Sbjct 453803 CAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGTGAC 453862 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| |||||||| ||| || ||| || Sbjct 453863 ACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAGCAG 453922 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| ||||||||||| | || | | || |||||| || Sbjct 453923 CGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAACATC 453982 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 453983 CAGAAGGAGTCCACTCTCCACCTGGT 454008 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| || ||||| || ||||| ||| || ||| || | | |||||||| Sbjct 449429 AAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTGATCTTCGC 449487 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| || ||||||||||||||| | || | |||| |||||| ||||||||||||| || Sbjct 449488 CGGCAAACAGTTGGAAGATGGACGCACACTCTCCGACTACAACATCCAGAAAGAGTCCAC 449547 Query 206367 TCTTCACCTTGT 206378 || || ||||| Sbjct 449548 CCTCCATCTTGT 449559 >seq110 Length=2794823 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| ||||| || |||||||| |||||||||||||| || |||||| | || Sbjct 1817605 CAAGACGCTGACTGGAAAAACCATCACTTTGGAAGTTGAGCCCAGTGACACCATTGAGAA 1817546 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || ||||| ||| || || || | | ||||| Sbjct 1817545 CGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGCAGCGGTTGATCTT 1817486 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| | ||||||||| | || || | ||||||||| ||||||| ||||| Sbjct 1817485 CGCTGGCAAGCAGCTTGAAGATGGACGCACGCTGTCTGATTACAACATCCAGAAGGAGTC 1817426 Query 206364 TACTCTTCACCTTGT 206378 || || ||||| || Sbjct 1817425 CACCCTCCACCTGGT 1817411 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| ||||| || |||||||| |||||||||||||| || |||||| | || Sbjct 1819010 CAAGACGCTGACTGGAAAAACCATCACTTTGGAAGTTGAGCCCAGTGACACCATTGAGAA 1818951 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| || || || ||||| ||| || || || | | ||||| Sbjct 1818950 CGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGCAGCGGTTGATCTT 1818891 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| | ||||||||| | || || | ||||||||| ||||||| ||||| Sbjct 1818890 CGCTGGCAAGCAGCTTGAAGATGGACGCACGCTGTCTGATTACAACATCCAGAAGGAGTC 1818831 Query 206364 TACTCTTCACCTTGT 206378 || || ||||| || Sbjct 1818830 CACCCTCCACCTGGT 1818816 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| || ||||| || ||||| ||| || ||| || | | |||||||| Sbjct 1817769 AAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTGATCTTCGC 1817711 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| || ||||||||||||||| | || | |||| |||||| ||||||||||||| || Sbjct 1817710 CGGCAAACAGTTGGAAGATGGACGCACACTCTCCGACTACAACATCCAGAAAGAGTCCAC 1817651 Query 206367 TCTTCACCTTGT 206378 || || ||||| Sbjct 1817650 CCTCCATCTTGT 1817639 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| || ||||| || ||||| ||| || ||| || | | |||||||| Sbjct 1819174 AAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTGATCTTCGC 1819116 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| || ||||||||||||||| | || | |||| |||||| ||||||||||||| || Sbjct 1819115 CGGCAAACAGTTGGAAGATGGACGCACACTCTCCGACTACAACATCCAGAAAGAGTCCAC 1819056 Query 206367 TCTTCACCTTGT 206378 || || ||||| Sbjct 1819055 CCTCCATCTTGT 1819044 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/132 (76%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| || ||||| || ||||| ||| || ||| || | | |||||||| Sbjct 1819402 AAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTGATCTTCGC 1819344 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| || ||||||||||||||| | || | |||| |||||| ||||||||||||| || Sbjct 1819343 CGGCAAACAGTTGGAAGATGGACGCACACTCTCCGACTACAACATCCAGAAAGAGTCCAC 1819284 Query 206367 TCTTCACCTTGT 206378 || || ||||| Sbjct 1819283 CCTCCATCTTGT 1819272 Score = 86.0 bits (94), Expect = 1e-11 Identities = 99/132 (75%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||| ||| || ||||| || ||||| ||| || ||| || | || ||||| || Sbjct 1819630 AAAGCTAAA-ATCCAAGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTCTGATCTTTGC 1819572 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || |||||| ||||||||||| | || || |||| |||||| ||||||||||||| || Sbjct 1819571 TGGCAAGCAGCTGGAAGATGGACGCACACTGTCCGACTACAACATCCAGAAAGAGTCCAC 1819512 Query 206367 TCTTCACCTTGT 206378 || || || || Sbjct 1819511 CCTCCATCTCGT 1819500 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||| || || || || ||||| | || || || |||| Sbjct 1818072 CAGATCTTCGTCAAGACGCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGTGAC 1818013 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||| ||| || ||| || Sbjct 1818012 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAG 1817953 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| ||||||||||| | || || |||| |||||| || Sbjct 1817952 CGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACACTGTCCGACTACAACATC 1817893 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || || || || Sbjct 1817892 CAGAAAGAGTCCACCCTCCATCTCGT 1817867 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || ||||| |||||| | || |||||| |||| Sbjct 1818528 CAGATCTTTGTGAAGACCTTGACTGGTAAAACCATCACTCTTGAGGTGGAACCAAGTGAC 1818469 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||| |||||||| ||| || || || Sbjct 1818468 ACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGAGCAGCAG 1818409 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||| | ||||||||||| | || | | || |||||| || Sbjct 1818408 CGTCTGATCTTTGCTGGTAAGCCGCTGGAAGATGGACGCACCCTCCCTGACTACAACATC 1818349 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || || || || Sbjct 1818348 CAGAAAGAGTCCACCCTCCATCTCGT 1818323 >seq475 Length=1111492 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| |||||| ||||| || || || ||||| | || || || ||| Sbjct 248073 CAGATCTTTGTCAAAACCCTCACTGGTAAGACCATCACCCTTGAGGTTGAGCCAAGC--- 248129 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| | || || ||| ||||| || || |||||||| ||| || ||| Sbjct 248130 GACACCATTGAGAACGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAG 248189 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || | ||||| ||||| || ||| |||||||||| | || ||| | || |||||| Sbjct 248190 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACATTGTCTGACTACAAC 248249 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||||| || | || ||||| Sbjct 248250 ATCCAGAAAGAGTCCACCTTGCATCTTGT 248278 >seq453 Length=1395482 Score = 87.8 bits (96), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| |||||| ||||| || || || ||||| | || || || ||| Sbjct 606496 CAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCAAGC--- 606440 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| | || |||||| |||||| || || |||||||| ||| || || Sbjct 606439 GACACCATTGAGAACGTAAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGATCAG 606380 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || || ||||| || || || ||| |||||||||| | || || | || |||||| Sbjct 606379 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAAC 606320 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 ||||||||||||| || | || || || ||| Sbjct 606319 ATCCAGAAAGAGTCCACCTTGCATCTGGTATTG 606287 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || || || |||| Sbjct 606040 CAGATCTTCGTCAAGACTCTCACTGGCAAGACAATCACCCTTGAGGTTGAGCCCAGTGAC 605981 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| |||||| || || |||||||| ||| || ||| || Sbjct 605980 ACCATTGAGAACGTAAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGCAG 605921 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || || ||| |||||||||| | || || | || |||||| || Sbjct 605920 AGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACAACATC 605861 Query 206353 CAGAAAGAGTCTAC 206366 ||||||||||| || Sbjct 605860 CAGAAAGAGTCCAC 605847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181347201195117