Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq824 102 3e-18 seq37 102 3e-18 seq667 100 9e-18 seq67 98.7 3e-17 seq47 98.7 3e-17 seq384 95.1 4e-16 seq1749 91.5 5e-15 seq668 91.5 5e-15 seq2574 87.8 6e-14 seq907 80.6 8e-12 seq1891 78.8 3e-11 >seq824 Length=505986 Score = 102 bits (112), Expect = 3e-18 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 2760 GTGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819 || || || || ||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 112898 GTCTTCATTGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCT 112839 Query 2820 GGTTCAACCCCGGGCTTCAGC 2840 ||||| | |||||| ||| || Sbjct 112838 GGTTCGATCCCGGGTTTCGGC 112818 >seq37 Length=4868255 Score = 102 bits (112), Expect = 3e-18 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1240483 GGCAGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 1240424 Query 2828 CCCGGGCTT 2836 |||||| || Sbjct 1240423 CCCGGGTTT 1240415 >seq667 Length=701931 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 377410 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 377351 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 377350 CCCGGGTTTCGGC 377338 >seq67 Length=2855591 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 238845 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 238904 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 238905 CCGGGTTTCGGC 238916 >seq47 Length=5241701 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1034059 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1034118 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1034119 CCGGGTTTCGGC 1034130 >seq384 Length=929916 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 133655 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 133714 Query 2829 CCGGGCTTCAGC 2840 |||| ||| || Sbjct 133715 ACGGGTTTCGGC 133726 >seq1749 Length=384638 Score = 91.5 bits (100), Expect = 5e-15 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| | Sbjct 158814 GGCTGAAATAGCTCAGTTGGGCGAGCATTAGACTGAAGATTTAAAGGTCCCTGGTTTGAT 158755 Query 2828 CCCGGGCTTCAGC 2840 || ||| ||| || Sbjct 158754 CCTGGGTTTCGGC 158742 Score = 91.5 bits (100), Expect = 5e-15 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| ||||||||||||||| || |||||||||||||| ||||||||||||||| | Sbjct 161664 GGCAGAAATAGCTCAGTTGGGAGCGCTTTAGACTGAAGATCAAAAGGTCCCTGGTTCGAT 161605 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 161604 CCCGGGTTTCGGC 161592 Score = 87.8 bits (96), Expect = 6e-14 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| || | Sbjct 141021 GGCCGAAATAGCTCAGTTGGGAGAGAGTTAGACTGAAGATCTAAAGGTCCCTGGATCGAT 140962 Query 2828 CCCGGGCTTCAGC 2840 ||||| ||| || Sbjct 140961 CCCGGCTTTCGGC 140949 >seq668 Length=790149 Score = 91.5 bits (100), Expect = 5e-15 Identities = 53/55 (96%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGT 2822 ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 531567 GGCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGT 531513 Score = 89.7 bits (98), Expect = 2e-14 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 530543 GGCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTGAAGGTCCCTGGTTC 530487 Score = 87.8 bits (96), Expect = 6e-14 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| ||||||||||||| |||| |||||||||||||||||||||| ||||| | | Sbjct 532064 GGCCGAAATAGCTCAGTTGGGGGAGCGTTAGACTGAAGATCTAAAGGTCACTGGTCCGAT 532005 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 532004 CCCGGGTTTCGGC 531992 >seq2574 Length=48057 Score = 87.8 bits (96), Expect = 6e-14 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| || | Sbjct 3487 GGCCGAAATAGCTCAGTTGGGAGAGAGTTAGACTGAAGATCTAAAGGTCCCTGGATCGAT 3428 Query 2828 CCCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3427 CCCGGCTTTCGGC 3415 Score = 84.2 bits (92), Expect = 7e-13 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 || ||||| | |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 17352 TAAGGCTGTAATAGCTCAGTTGGGAGAGCGTTAGACTGAATATCTAAAGGTCCCTGGTT 17294 >seq907 Length=568330 Score = 80.6 bits (88), Expect = 8e-12 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 |||||||| |||||||||||||||||| ||| ||||||| |||||||||||| |||| Sbjct 19488 TGGCTGAAATAGCTCAGTTGGGAGAGCGTTAAACTGAAGCTCTAAAGGTCCCGGGTT 19432 >seq1891 Length=151398 Score = 78.8 bits (86), Expect = 3e-11 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 2764 TTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819 || |||||||| ||||||||||| |||||| |||||||||||||| |||||||||| Sbjct 94871 TTGTGGCTGAAATAGCTCAGTTGAGAGAGCGTTAGACTGAAGATCAAAAGGTCCCT 94816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15844177975665