Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq987 120 4e-22 seq566 120 4e-22 seq362 120 4e-22 seq15 114 2e-20 seq124 98.7 1e-15 seq3467 86.0 9e-12 >seq987 Length=405153 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || || | |||||||| ||||| || || | || | Sbjct 241995 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 241936 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| | ||||||||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 241935 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 241876 Query 39759 CAACAAGTCTCTCTCC 39774 | || | || |||||| Sbjct 241875 CTACTAATCGCTCTCC 241860 >seq566 Length=1676785 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || || | |||||||| ||||| || || | || | Sbjct 224425 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 224484 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| | ||||||||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 224485 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 224544 Query 39759 CAACAAGTCTCTCTCC 39774 | || | || |||||| Sbjct 224545 CTACTAATCGCTCTCC 224560 >seq362 Length=1554118 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || || || |||||||||||||| || || | ||| | Sbjct 600552 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 600611 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || | ||||||||| || ||||||||||| ||||| || || ||||| | Sbjct 600612 TTAGCCAGAAAATAGAAGCAAAAGACCCGGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 600671 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| |||||| || Sbjct 600672 CCACAACTCTCTCCCC 600687 >seq15 Length=4212223 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | || || || || |||||||||||||| || || | ||| | Sbjct 2564874 CCTCATCTCTGCTGATAAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 2564815 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || | ||||||||| |||||||||||||| ||||| || || ||||| | Sbjct 2564814 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 2564755 Query 39759 CAACAAGTCTCTCTCC 39774 | || | |||||| || Sbjct 2564754 CCACCACTCTCTCCCC 2564739 >seq124 Length=2461953 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | ||||||||| |||||||||||||| || ||||| ||||||||| Sbjct 435955 GTGCCGGCATTGAAGAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCAGAGAGCAGATTG 436014 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||||| ||||||| | || ||| || ||| ||||| | | || | ||||| | Sbjct 436015 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACGGACACTCTCATCAGC 436074 Query 70111 ATATGCTGAGGTCGTTC 70127 || || || || || || Sbjct 436075 ATGTGTTGTGGCCGCTC 436091 >seq3467 Length=20596 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || || || || | ||||||||| || ||||||||||| || ||||| ||||| ||| Sbjct 2455 GTGCCAGCGTTGAAGAGTGTAGGAGAAGCATGAGTGAACCACTTCTCAGACAGCAGGTTG 2396 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||||| ||||||| | || ||| || ||| ||||| | | || | ||||| | Sbjct 2395 TAGGTTTCTATAGCTGCCGCAATGTCCTCCTTATGGATTCCCACAGACACTCTCATCAGC 2336 Query 70111 ATATGCTGAGGTCGTTC 70127 || || || || || || Sbjct 2335 ATGTGTTGTGGCCGCTC 2319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686640244418280