Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq706 98.7 8e-16 seq925 93.3 3e-14 seq566 93.3 3e-14 seq106 93.3 3e-14 seq987 91.5 1e-13 seq362 89.7 4e-13 seq15 87.8 1e-12 >seq706 Length=954768 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| ||| |||||||||||||| | | ||||| ||| Sbjct 720402 TGATGGCGTTGCCCCCGTGCCATGCGTTGTGTCAGTTTTACGTGTCAGACGGTGAGTTGT 720461 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | ||||| |||| || | || ||||| || || || || || || || ||||| || | Sbjct 720462 CGTGTCAGCTGTACCAGCGCTCTGGTGATATCGGTCTGGGTGTGCCTTTCAACATCGCCA 720521 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||| || || |||||||| ||| Sbjct 720522 GCTACGCACTGCTGACCTACATGATTGCCCAC 720553 >seq925 Length=440053 Score = 93.3 bits (102), Expect = 3e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 47226 TTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAA 47285 |||||||||| ||| |||| || |||||| || | |||||||| ||||||||||| |||| Sbjct 21365 TTTTAGGACTCTATAAAAAGTCTGGGAAATTAGTTTTTCTCGGATTAGACAATGCCGGAA 21306 Query 47286 AAACGGCATTACTCCACATGCTCAAA 47311 |||| ||||| | |||||||| ||| Sbjct 21305 AAACAACATTATTGCACATGCTTAAA 21280 >seq566 Length=1676785 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 44116 TTCTTTT--GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGA 44173 ||||||| ||||| ||| | || || ||||||| ||||||||||| ||||| || ||| Sbjct 224569 TTCTTTTTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGA 224510 Query 44174 TCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA 44233 || ||||| ||||| | ||||| |||||| |||| ||||||| || | || | || Sbjct 224509 TCATTTGCTGCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCC 224450 Query 44234 AATGAGTTAATAAGTCGTGATGA 44256 ||||| | || || | ||||| Sbjct 224449 AATGAACTCATCAGCAGAGATGA 224427 >seq106 Length=3825740 Score = 93.3 bits (102), Expect = 3e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47226 TTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAA 47285 |||||||||| ||| |||| || |||||| || | |||||||| ||||||||||| |||| Sbjct 2029049 TTTTAGGACTCTATAAAAAGTCTGGGAAATTAGTTTTTCTCGGATTAGACAATGCCGGAA 2029108 Query 47286 AAACGGCATTACTCCACATGCTCAAA 47311 |||| ||||| | |||||||| ||| Sbjct 2029109 AAACAACATTATTGCACATGCTTAAA 2029134 >seq987 Length=405153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 ||| ||||| ||| | || || ||||||| ||||||||||| ||||| || ||||| || Sbjct 241856 TTTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATT 241915 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 ||| ||||| | ||||| |||||| |||| ||||||| || | || | || ||||| Sbjct 241916 TGCTGCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCCAATGA 241975 Query 44239 GTTAATAAGTCGTGATGA 44256 | || || | ||||| Sbjct 241976 ACTCATCAGCAGAGATGA 241993 >seq362 Length=1554118 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | || ||||| ||| | | ||||| || || || || || || || |||||| Sbjct 601228 CGATTTACTCAGGAAGTCCAAGTGACTGAAGCCCGTTGCTTCTACGGTTTCCAGATTGCC 601169 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || || || |||||||||||||| |||| || || |||||||||||| Sbjct 601168 ATGGAAAACATCCACTCTGAAATGTACAGTCTGTTGATTGACACCTACATCAAAGAT 601112 >seq15 Length=4212223 Score = 87.8 bits (96), Expect = 1e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||||||||| || |||||||| ||||| |||||||| |||||| |||| Sbjct 2563746 TTTGTCATTTTTCCAATTCAGTACCATGACATCTGGCAGATGTACAAGAAAGCAGAGGCC 2563805 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || ||||| ||||| || || Sbjct 2563806 TCCTTCTGGACCGCAGAGGAGGT 2563828 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | || || || ||| | | ||||| || || || || || || || ||||| Sbjct 2564195 CGATTTACTCAGGAGGTCCAAGTGACCGAAGCCCGTTGCTTCTACGGTTTCCAGATTGCA 2564254 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||| || |||||||||||||| |||| || || |||||||||||| Sbjct 2564255 ATGGAAAACATTCACTCTGAAATGTACAGTCTGTTGATTGACACCTACATCAAAGAT 2564311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397304494368385