Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sinocyclocheilus_20grahami_20[refseq_20GCF_5F001515645.1_202015-12- 16] 31,277 sequences; 1,750,287,761 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1186 104 2e-17 seq110 95.1 1e-14 seq3467 87.8 2e-12 seq124 82.4 6e-11 >seq1186 Length=611208 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 |||||| || || | |||| || | ||| | || || || || || || |||||||| Sbjct 454486 ATTGCCGCCACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 454427 Query 27077 GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGG 27136 | | |||| | ||||| ||||| ||||| ||| | || |||||||| ||||| || Sbjct 454426 AGAGAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGATCAGG 454367 Query 27137 CGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTC 27196 || | || || || || ||||||| || | | | |||| ||||| ||| || Sbjct 454366 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCTATGGTGTCGCTGGGCTC 454307 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || || || | ||||| |||| || ||||||||||| |||||| Sbjct 454306 AACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATA 454255 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || |||||||| | | |||| | ||||| ||||| ||||| Sbjct 449319 GTGGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTACCA 449260 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| || || || || | || ||||| || ||||||| || Sbjct 449259 GCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTG 449200 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| ||||| | | ||| || || ||||| || | ||| || |||| || Sbjct 449199 ACATTCTCTATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTACCAGTCAAGGTC 449140 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 449139 TTCACAAAGATCTGCAT 449123 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| | || || ||||| || || Sbjct 454224 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTGCTTGCCA 454165 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| ||||| || || | || || || || ||||||| || Sbjct 454164 GCGAAGATCAGACGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 454105 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| ||||| || || | || | ||||| |||| || Sbjct 454104 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGGGATGGTCTTGCCAGTCAAGGTC 454045 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 454044 TTCACAAAGATCTGCATA 454027 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| | ||||| ||||| ||||| Sbjct 453996 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTCCAGCTGCTTACCA 453937 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || |||||||| || || || || | || ||||| || ||||||| || Sbjct 453936 GCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTG 453877 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| ||||| | | ||| || || ||||| || | ||| || |||| || Sbjct 453876 ACATTCTCTATGGTGTCACTTGGTTCCACCTCAAGAGTGATGGTTTTACCAGTCAAGGTC 453817 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 453816 TTCACAAAGATCTGCAT 453800 >seq110 Length=2794823 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 |||||| || || | |||| || | ||| | || || || || || || |||||||| Sbjct 1817161 ATTGCCCCCACGAAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1817220 Query 27077 GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGG 27136 | || |||| | || || ||||| || || ||| | || |||||||| || || || Sbjct 1817221 GGACAGCGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCAGG 1817280 Query 27137 CGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTC 27196 || | || || || || ||||||| |||| | | || | ||||| ||| || Sbjct 1817281 AGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTC 1817340 Query 27197 AACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || || || || | ||||| |||| || ||||||||||| |||||| Sbjct 1817341 AACCTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATA 1817392 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | || || ||||| || || |||||||| | | |||| | Sbjct 1818317 CGCAGGACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGGGAGGGTGCGTCCA 1818376 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||| | ||||| || | || |||||||| || || || || | || ||||| Sbjct 1818377 TCTTCCAGCGGCTTACCAGCAAAGATCAGACGCTGCTGCTCAGGAGGAATGCCTTCTTTG 1818436 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | |||| ||||| | | ||| || || ||||| || Sbjct 1818437 TCTTGGATCTTGGCCTTGACATTCTCTATGGTGTCACTTGGTTCCACCTCAAGAGTGATG 1818496 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || |||| || ||||||||||| ||||| Sbjct 1818497 GTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1818531 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || || |||| | ||||| ||||| || || Sbjct 1817423 GTGGACTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCAAGCTGCTTGCCA 1817482 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | ||||| ||||| || || | || || || || ||||||| ||| Sbjct 1817483 GCGAAGATCAACCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1817542 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| |||||||| | ||| || | ||| || ||||| || Sbjct 1817543 ACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTTTTTCCAGTCAGCGTC 1817602 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 1817603 TTGACGAAGATTTGCATA 1817620 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||| || || |||| | ||||| ||||| || || Sbjct 1818828 GTGGACTCCTTCTGGATGTTGTAATCAGACAGCGTGCGTCCATCTTCAAGCTGCTTGCCA 1818887 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | ||||| ||||| || || | || || || || ||||||| ||| Sbjct 1818888 GCGAAGATCAACCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1818947 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| |||||||| | ||| || | ||| || ||||| || Sbjct 1818948 ACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAAAGTGATGGTTTTTCCAGTCAGCGTC 1819007 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 1819008 TTGACGAAGATTTGCATA 1819025 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| || | ||| | || || ||||| || || ||||||||| || |||| | Sbjct 1819494 CGCAGGACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGTGTGCGTCCA 1819553 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || |||||||| || || || || | || || || Sbjct 1819554 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTG 1819613 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| || ||| | | || | ||||| ||| ||||| || || || || Sbjct 1819614 TCTTGGATTTTAGCTTTGACATTCTCAATGGTGTCGCTGGGCTCAACCTCGAGGGTGATG 1819673 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 1819674 GTCTTGCCAGTCAGCGTCTTCACAAAGATCTGCAT 1819708 >seq3467 Length=20596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 131645 TCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT 131704 || ||||||||||| || | ||| || | ||| | ||||| ||||||||||||||| | Sbjct 3148 TCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCGTAAAACAGATCTCTAGCTCTC 3089 Query 131705 TTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAG 131764 | || ||| |||| | | ||||| | | || ||||| |||||||| ||||||| Sbjct 3088 TGTTCCTCTTTACCAGTGTTCTTTTTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAG 3029 Query 131765 GGTTCCAAATACA 131777 ||||||| |||| Sbjct 3028 GGTTCCAGGTACA 3016 >seq124 Length=2461953 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 131645 TCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT 131704 || ||||||||||| || | ||| || | ||| | || || ||||||||||||||| | Sbjct 435250 TCCACTCGCTTCATGAAGAGATCAGGGATCCAGAGGGCATAAAACAGATCTCTAGCTCTC 435309 Query 131705 TTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAG 131764 | || ||| |||| || | ||||| | | || ||||| |||||||| ||||||| Sbjct 435310 TGTTCCTCTTTACCAGTATTCTTTTTAAGCTCTAGGAAGTCAAAAATGTCAAAATGCCAG 435369 Query 131765 GGTTCCAAATACA 131777 || |||| |||| Sbjct 435370 GGCTCCAGGTACA 435382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424772419920024